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Understanding how antibiotics inhibit bacteria can help to reduce antibiotic use and hence avoid antimicrobial resistance - yet few theoretical models exist for bacterial growth inhibition by a clinically relevant antibiotic treatment…

细胞行为 · 定量生物学 2017-12-06 Philip Greulich , Jakub Dolezal , Matthew Scott , Martin R. Evans , Rosalind J. Allen

Growth in bacterial populations generally depends on the environment (availability and quality of nutrients, presence of a toxic inhibitor, product inhibition..). Here, we build a model to describe the action of a bacteriostatic antibiotic,…

生物物理 · 物理学 2025-06-25 Barnabe Ledoux , David Lacoste

Bacteria evolve resistance to antibiotics by a multitude of mechanisms. A central, yet unsolved question is how resistance evolution affects cell growth at different drug levels. Here we develop a fitness model that predicts growth rates of…

种群与进化 · 定量生物学 2020-07-03 Fernanda Pinheiro , Omar Warsi , Dan I. Andersson , Michael Lässig

Antimicrobial protocols - using substances such as antibiotics or disinfectants - remain the preferred option for preventing the spread of pathogenic bacteria. However, bacteria can develop mechanisms to reduce their antimicrobial…

种群与进化 · 定量生物学 2026-02-17 Nerea Martínez-López , Niclas Nordholt , Frank Schreiber , Míriam R. García

The evolution of antibiotic resistance among bacteria threatens our continued ability to treat infectious diseases. The need for sustainable strategies to cure bacterial infections has never been greater. So far, all attempts to restore…

Biological evolution of a population is governed by the fitness landscape, which is a map from genotype to fitness. However, a fitness landscape depends on the organisms environment, and evolution in changing environments is still poorly…

种群与进化 · 定量生物学 2022-09-26 Suman G Das , Joachim Krug , Muhittin Mungan

Bacteria develop resistance to antibiotics through various mechanisms, with the specific mechanism depending on the drug-bacteria pair. It remains unclear, however, which resistance mechanism best supports favorable treatment outcomes,…

种群与进化 · 定量生物学 2025-11-06 Ailin Zhang , Shigui Ruan , Xi Huo

Bacterial resistance to antibiotic treatment is a huge concern: introduction of any new antibiotic is shortly followed by the emergence of resistant bacterial isolates in the clinic. This issue is compounded by a severe lack of new…

细胞行为 · 定量生物学 2014-09-16 Lucy Ternent , Rosemary J. Dyson , Anne-Marie Krachler , Sara Jabbari

The rise and spread of antibiotic resistance causes worsening medical cost and mortality especially for life-threatening bacteria infections, thereby posing a major threat to global health. Prescribing behavior of physicians is one of the…

种群与进化 · 定量生物学 2018-10-23 Xingru Chen , Feng Fu

Humans, domestic animals, orchard crops, and ornamental plants are commonly treated with antibiotics in response to bacterial infection. By curing infectious individuals, antibiotic therapy might limit the spread of contagious disease among…

种群与进化 · 定量生物学 2020-11-04 Thomas Caraco

Bacterial plant pathogens rely on a battalion of transcription factors to fine-tune their response to changing environmental conditions and marshal the genetic resources required for successful pathogenesis. Prediction of transcription…

基因组学 · 定量生物学 2013-06-27 Surya Saha , Magdalen Lindeberg

The aim of this paper is to study two models for a bacterial population subject to antibiotic treatments. It is known that some bacteria are sensitive to antibiotics. These bacteria are in a state called persistence and each bacterium can…

概率论 · 数学 2013-04-15 Fabio Zucca

Humans, domestic animals, orchard crops, and ornamental plants are commonly treated with antibiotics in response to bacterial infection. By curing infectious individuals, antibiotic therapy might limit the spread of contagious disease among…

种群与进化 · 定量生物学 2020-01-22 Thomas Caraco

Gene networks exhibiting oscillatory dynamics are widespread in biology. The minimal regulatory designs giving rise to oscillations have been implemented synthetically and studied by mathematical modeling. However, most of the available…

分子网络 · 定量生物学 2013-01-31 Matteo Osella , Marco Cosentino Lagomarsino

One of the most challenging problems in microbiology is to understand how a small fraction of microbes that resists killing by antibiotics can emerge in a population of genetically identical cells, the phenomenon known as persistence or…

亚细胞过程 · 定量生物学 2015-06-17 Andrea Rocco , Andrzej M. Kierzek , Johnjoe McFadden

Bacteria are highly adaptive microorganisms that thrive in a wide range of growth conditions via changes in cell morphologies and macromolecular composition. How bacterial morphologies are regulated in diverse environmental conditions is a…

细胞行为 · 定量生物学 2021-10-26 Diana Serbanescu , Nikola Ojkic , Shiladitya Banerjee

As antibiotic resistance continues to pose a significant threat to public health, alternative treatments are urgently needed. Phage therapy, which utilizes bacteriophages to specifically target bacterial pathogens, has emerged as a…

种群与进化 · 定量生物学 2025-02-27 Blessing Emerenini , Edward Beck , Kathryn Cantrel , Vedat Kurtay

Background: Microbiota have evolved to acclimate themselves to many environments. Humanity is become ever increasingly medicated and many of those medications are antibiotics. Sadly, Microbiota are adapting to medication and with each…

基因组学 · 定量生物学 2012-09-27 Casey Richardson

Despite growth being fundamental to all aspects of cell biology, we do not yet know its organizing principles in eukaryotic cells. Classic models derived from the bacteria E. coli posit that protein-synthesis rates are set by mass-action…

种群与进化 · 定量生物学 2025-08-22 Xin Gao , Michael Lanz , Rosslyn Grosely , Jonas Cremer , Joseph Puglisi , Jan M. Skotheim

The intestinal microbiota plays important roles in digestion and resistance against entero-pathogens. As with other ecosystems, its species composition is resilient against small disturbances but strong perturbations such as antibiotics can…

定量方法 · 定量生物学 2015-06-04 Vanni Bucci , Serena Bradde , Giulio Biroli , Joao B. Xavier
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