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In recent years, the Hamiltonian Monte Carlo (HMC) algorithm has been found to work more efficiently compared to other popular Markov Chain Monte Carlo (MCMC) methods (such as random walk Metropolis-Hastings) in generating samples from a…

统计计算 · 统计学 2014-02-18 Andrew L. Beam , Sujit K. Ghosh , Jon Doyle

Hippocampal place cells can encode spatial locations of an animal in physical or task-relevant spaces. We simulated place cell populations that encoded either Euclidean- or graph-based positions of a rat navigating to goal nodes in a maze…

神经元与认知 · 定量生物学 2022-11-17 Thibault Niederhauser , Adam Lester , Nina Miolane , Khanh Dao Duc , Manu S. Madhav

We investigate the effect of using local and non-local second derivative information on the performance of Hamiltonian Monte Carlo (HMC) sampling methods, for high-dimension non-Gaussian distributions, with application to Bayesian inference…

统计计算 · 统计学 2023-05-03 Mina Karimi , Kaushik Dayal , Matteo Pozzi

Neurons can code for multiple variables simultaneously and neuroscientists are often interested in classifying neurons based on their receptive field properties. Statistical models provide powerful tools for determining the factors…

神经元与认知 · 定量生物学 2022-10-28 Mehrad Sarmashghi , Shantanu P. Jadhav , Uri T. Eden

The hierarchical Dirichlet process (HDP) has become an important Bayesian nonparametric model for grouped data, such as document collections. The HDP is used to construct a flexible mixed-membership model where the number of components is…

机器学习 · 统计学 2012-01-10 Chong Wang , David M. Blei

Non-invasive marks, including pigmentation patterns, acquired scars,and genetic mark- ers, are often used to identify individuals in mark-recapture experiments. If animals in a population can be identified from multiple, non-invasive marks…

统计方法学 · 统计学 2015-03-20 Simon J. Bonner , Jason A. Holmberg

The hybrid Monte Carlo (HMC) algorithm is applied for the Bayesian inference of the stochastic volatility (SV) model. We use the HMC algorithm for the Markov chain Monte Carlo updates of volatility variables of the SV model. First we…

计算金融 · 定量金融 2010-12-30 Tetsuya Takaishi

It is now widely accepted that one of the roles of the hippocampus is to maintain episodic spatial representations, while parallel striatal pathways contribute to both declarative and procedural value computations by encoding different…

神经元与认知 · 定量生物学 2014-12-10 Fabian Chersi

Traditionally, the field of computational Bayesian statistics has been divided into two main subfields: variational methods and Markov chain Monte Carlo (MCMC). In recent years, however, several methods have been proposed based on combining…

统计计算 · 统计学 2017-04-19 Cheng Zhang , Babak Shahbaba , Hongkai Zhao

The gap between our ability to collect interesting data and our ability to analyze these data is growing at an unprecedented rate. Recent algorithmic attempts to fill this gap have employed unsupervised tools to discover structure in data.…

机器学习 · 计算机科学 2018-01-23 Genevieve Flaspohler , Nicholas Roy , Yogesh Girdhar

Community detection has been an active research area for decades. Among all probabilistic models, Stochastic Block Model has been the most popular one. This paper introduces a novel probabilistic model: RW-HDP, based on random walks and…

应用统计 · 统计学 2016-08-04 Ruimin Zhu , Wenxin Jiang

Humans are expert explorers. Understanding the computational cognitive mechanisms that support this efficiency can advance the study of the human mind and enable more efficient exploration algorithms. We hypothesize that humans explore new…

机器学习 · 计算机科学 2022-03-21 Sugandha Sharma , Aidan Curtis , Marta Kryven , Josh Tenenbaum , Ila Fiete

The coalescence of binary neutron stars are one of the main sources of gravitational waves for ground-based gravitational wave detectors. As Bayesian inference for binary neutron stars is computationally expensive, more efficient and faster…

广义相对论与量子宇宙学 · 物理学 2019-11-20 Yann Bouffanais , Edward K. Porter

Since Hamming distances can be calculated by bitwise computations, they can be calculated with less computational load than L2 distances. Similarity searches can therefore be performed faster in Hamming distance space. The elements of…

机器学习 · 计算机科学 2013-03-19 Yui Noma , Makiko Konoshima

Hierarchical Bayesian models are increasingly used in large, inhomogeneous complex network dynamical systems by modeling parameters as draws from a hyperparameter-governed distribution. However, theoretical guarantees for these estimates as…

统计理论 · 数学 2026-01-23 Yi Yu , Yubo Hou , Yinchong Wang , Nan Zhang , Jianfeng Feng , Wenlian Lu

Spectrum sensing in a large-scale heterogeneous network is very challenging as it usually requires a large number of static secondary users (SUs) to obtain the global spectrum states. To tackle this problem, in this paper, we propose a new…

信息论 · 计算机科学 2018-11-26 Yizhen Xu , Peng Cheng , Zhuo Chen , Yonghui Li , Branka Vucetic

Markov Chain Monte Carlo (MCMC) algorithms play an important role in statistical inference problems dealing with intractable probability distributions. Recently, many MCMC algorithms such as Hamiltonian Monte Carlo (HMC) and Riemannian…

统计计算 · 统计学 2017-04-19 Cheng Zhang , Babak Shahbaba , Hongkai Zhao

The Hamiltonian Monte Carlo (HMC) algorithm is a powerful Markov Chain Monte Carlo (MCMC) method that uses Hamiltonian dynamics to generate samples from a target distribution. To fully exploit its potential, we must understand how…

统计计算 · 统计学 2025-01-27 Abraham Granados , Isaías Bañales

In this paper, we explore the class of the Hidden Semi-Markov Model (HSMM), a flexible extension of the popular Hidden Markov Model (HMM) that allows the underlying stochastic process to be a semi-Markov chain. HSMMs are typically used less…

应用统计 · 统计学 2023-01-26 Patrick Aschermayr , Konstantinos Kalogeropoulos

The proposed analysis of the currently available experimental results concerning the neural cell activity in the brain area known as hippocampus suggests a particular mechanism of spatial information and memory processing. Below it is…

其他定量生物学 · 定量生物学 2007-05-23 Yu. Dabaghian , A. G. Cohn , L. Frank