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We present a theoretical model for retinocollicular map development, which can account for intriguing behaviors observed in gain-of-function experiments in knock-in mice by Brown et al., including bifurcation in heterozygous Isl2/EphA3…

生物物理 · 物理学 2007-05-23 Alexei A. Koulakov , Dmitry N. Tsigankov

Axons of retinal ganglion cells establish orderly projections to the superior colliculus of the midbrain. Axons of neighboring cells terminate proximally in the superior colliculus thus forming a topographically precise representation of…

神经元与认知 · 定量生物学 2007-05-23 D. N. Tsigankov , A. A. Koulakov

In wild-type mice axons of retinal ganglion cells establish topographically precise projection to the superior colliculus of the midbrain. This implies that axons of neighboring retinal ganglion cells project to the proximal locations in…

神经元与认知 · 定量生物学 2008-02-14 Dmitry Tsigankov , Alexei Koulakov

This paper presents a new proposal of an efficient computational model of face recognition which uses cues from the distributed face recognition mechanism of the brain, and by gathering engineering equivalent of these cues from existing…

计算机视觉与模式识别 · 计算机科学 2023-01-18 Pinaki Roy Chowdhury , Angad Wadhwa , Nikhil Tyagi

Computational models lie at the intersection of basic neuroscience and healthcare applications because they allow researchers to test hypotheses \textit{in silico} and predict the outcome of experiments and interactions that are very hard…

神经元与认知 · 定量生物学 2020-09-18 Katharina Glomb , Joana Cabral , Anna Cattani , Alberto Mazzoni , Ashish Raj , Benedetta Franceschiello

We present OCTCube-M, a 3D OCT-based multi-modal foundation model for jointly analyzing OCT and en face images. OCTCube-M first developed OCTCube, a 3D foundation model pre-trained on 26,685 3D OCT volumes encompassing 1.62 million 2D OCT…

图像与视频处理 · 电气工程与系统科学 2024-12-20 Zixuan Liu , Hanwen Xu , Addie Woicik , Linda G. Shapiro , Marian Blazes , Yue Wu , Verena Steffen , Catherine Cukras , Cecilia S. Lee , Miao Zhang , Aaron Y. Lee , Sheng Wang

Activity cliffs, which refer to pairs of molecules that are structurally similar but show significant differences in their potency, can lead to model representation collapse and make the model challenging to distinguish them. Our research…

计算机视觉与模式识别 · 计算机科学 2024-09-20 Zhixiang Cheng , Hongxin Xiang , Pengsen Ma , Li Zeng , Xin Jin , Xixi Yang , Jianxin Lin , Yang Deng , Bosheng Song , Xinxin Feng , Changhui Deng , Xiangxiang Zeng

The mapping between visual inputs on the retina and neuronal activations in the visual cortex, i.e., retinotopic map, is an essential topic in vision science and neuroscience. Human retinotopic maps can be revealed by analyzing the…

神经元与认知 · 定量生物学 2021-06-17 Yanshuai Tu , Duyan Ta , Zhong-Lin Lu , Yalin Wang

Living soft tissues appear to promote the development and maintenance of a preferred mechanical state within a defined tolerance around a so-called set-point. This phenomenon is often referred to as mechanical homeostasis. In contradiction…

计算工程、金融与科学 · 计算机科学 2021-09-23 Jonas F. Eichinger , Maximilian J. Grill , Iman Davoodi Kermani , Roland C. Aydin , Wolfgang A. Wall , Jay D. Humphrey , Christian J. Cyron

The mapping between the visual input on the retina to the cortical surface, i.e., retinotopic mapping, is an important topic in vision science and neuroscience. Human retinotopic mapping can be revealed by analyzing cortex functional…

神经元与认知 · 定量生物学 2020-05-27 Yanshuai Tu , Duyan Ta , Zhong-Lin Lu , Yalin Wang

Axon guidance (AG) towards their target during embryogenesis or after injury is an important issue in the development of neuronal networks. During their growth, axons often face complex decisions that are difficult to understand when…

神经元与认知 · 定量生物学 2015-08-10 Rui Ponte Costa

Neural circuits in the retina divide the incoming visual scene into more than a dozen distinct representations that are sent on to central brain areas, such as the lateral geniculate nucleus and the superior colliculus. The retina can be…

神经元与认知 · 定量生物学 2018-06-11 Samuel Chiquita

Recently, deep feedforward neural networks have achieved considerable success in modeling biological sensory processing, in terms of reproducing the input-output map of sensory neurons. However, such models raise profound questions about…

神经元与认知 · 定量生物学 2019-12-16 Hidenori Tanaka , Aran Nayebi , Niru Maheswaranathan , Lane McIntosh , Stephen A. Baccus , Surya Ganguli

3D action recognition was shown to benefit from a covariance representation of the input data (joint 3D positions). A kernel machine feed with such feature is an effective paradigm for 3D action recognition, yielding state-of-the-art…

计算机视觉与模式识别 · 计算机科学 2017-10-05 Jacopo Cavazza , Pietro Morerio , Vittorio Murino

We introduce deep neural networks for the analysis of anatomical shapes that learn a low-dimensional shape representation from the given task, instead of relying on hand-engineered representations. Our framework is modular and consists of…

计算机视觉与模式识别 · 计算机科学 2020-10-05 Benjamin Gutierrez Becker , Ignacio Sarasua , Christian Wachinger

Foundation models have emerged as a powerful paradigm in computational pathology (CPath), enabling scalable and generalizable analysis of histopathological images. While early developments centered on uni-modal models trained solely on…

计算机视觉与模式识别 · 计算机科学 2025-03-21 Dong Li , Guihong Wan , Xintao Wu , Xinyu Wu , Xiaohui Chen , Yi He , Christine G. Lian , Peter K. Sorger , Yevgeniy R. Semenov , Chen Zhao

The field of computational modeling of the brain is advancing so rapidly that now it is possible to model large scale networks representing different brain regions with a high level of biological detail in terms of numbers and synapses. For…

We present a bigraphical framework suited for modeling biological systems both at protein level and at membrane level. We characterize formally bigraphs corresponding to biologically meaningful systems, and bigraphic rewriting rules…

计算工程、金融与科学 · 计算机科学 2009-11-25 Giorgio Bacci , Davide Grohmann , Marino Miculan

Objective Reticular pseudodrusen (RPD), a key feature of age-related macular degeneration (AMD), are poorly detected by human experts on standard color fundus photography (CFP) and typically require advanced imaging modalities such as…

Tree-like structures such as retinal images are widely studied in computer-aided diagnosis systems for large-scale screening programs. Despite several segmentation and tracking methods proposed in the literature, there still exist several…

计算机视觉与模式识别 · 计算机科学 2017-06-27 Samaneh Abbasi-Sureshjani , Marta Favali , Giovanna Citti , Alessandro Sarti , Bart M. ter Haar Romeny
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