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The effective visualization of genomic data is crucial for exploring and interpreting complex relationships within and across genes and genomes. Despite advances in developing dedicated bioinformatics software, common visualization tools…

基因组学 · 定量生物学 2024-11-22 Thomas Hackl , Markus Ankenbrand , Bart van Adrichem , David Wilkins , Kristina Haslinger

During the training phase of machine learning (ML) models, it is usually necessary to configure several hyperparameters. This process is computationally intensive and requires an extensive search to infer the best hyperparameter set for the…

机器学习 · 计算机科学 2024-04-19 Angelos Chatzimparmpas , Rafael M. Martins , Kostiantyn Kucher , Andreas Kerren

This paper is an invitation to the process systems engineering community to change the paradigm for process plants. The goal is to achieve much easier convergence while retaining accuracy on par with the rigorous models. Accurate plant…

系统与控制 · 电气工程与系统科学 2024-08-29 Vladimir Mahalec

Plant breeding is fundamentally comprised of three cyclic activities: 1) intermating lines to generate novel allelic combinations, 2) evaluation of new plant cultivars in distinct environments, and 3) selection of superior individuals to be…

定量方法 · 定量生物学 2021-07-14 Trevor W. Rife , Chaney Courtney , Guillaume Bauchet , Mitchell Neilsen , Jesse A. Poland

Automated identification of plants has improved considerably thanks to the recent progress in deep learning and the availability of training data with more and more photos in the field. However, this profusion of data only concerns a few…

计算机视觉与模式识别 · 计算机科学 2025-09-25 Herve Goeau , Pierre Bonnet , Alexis Joly

Embedding learning transforms discrete data entities into continuous numerical representations, encoding features/properties of the entities. Despite the outstanding performance reported from different embedding learning algorithms, few…

机器学习 · 计算机科学 2023-08-04 Yan Zheng , Junpeng Wang , Chin-Chia Michael Yeh , Yujie Fan , Huiyuan Chen , Liang Wang , Wei Zhang

This paper introduces a novel toolbox named BIDEAL for the generation of biclusters, their analysis, visualization, and validation. The objective is to facilitate researchers to use forefront biclustering algorithms embedded on a single…

其他计算机科学 · 计算机科学 2020-07-29 Nishchal K. Verma , T. Sharma , S. Dixit , P. Agrawal , S. Sengupta , V. Singh

In the present work we have selected a collection of statistical and mathematical tools useful for the exploration of multivariate data and we present them in a form that is meant to be particularly accessible to a classically trained…

统计理论 · 数学 2010-09-01 Magnus Fontes

Network visualization has traditionally relied on heuristic metrics, such as stress, under the assumption that optimizing them leads to aesthetic and informative layouts. However, no single metric consistently produces the most effective…

机器学习 · 计算机科学 2026-04-07 Peng Zhang , Xuefeng Li , Xiaoqi Wang , Han-Wei Shen , Yifan Hu

Large models can play important roles in many domains. Agriculture is another key factor affecting the lives of people around the world. It provides food, fabric, and coal for humanity. However, facing many challenges such as pests and…

计算机视觉与模式识别 · 计算机科学 2024-07-30 Hongyan Zhu , Shuai Qin , Min Su , Chengzhi Lin , Anjie Li , Junfeng Gao

Accurate prediction of crop states (e.g., phenology stages and cold hardiness) is essential for timely farm management decisions such as irrigation, fertilization, and canopy management to optimize crop yield and quality. While traditional…

人工智能 · 计算机科学 2026-05-20 William Solow , Paola Pesantez-Cabrera , Markus Keller , Lav Khot , Sandhya Saisubramanian , Alan Fern

Accurate prediction of crop yield supported by scientific and domain-relevant insights, can help improve agricultural breeding, provide monitoring across diverse climatic conditions and thereby protect against climatic challenges to crop…

Plant disease recognition has witnessed a significant improvement with deep learning in recent years. Although plant disease datasets are essential and many relevant datasets are public available, two fundamental questions exist. First, how…

计算机视觉与模式识别 · 计算机科学 2023-12-14 Mingle Xu , Ji Eun Park , Jaehwan Lee , Jucheng Yang , Sook Yoon

Several researches in leaf identification did not include color information as features. The main reason is caused by a fact that they used green colored leaves as samples. However, for foliage plants, plants with colorful leaves, fancy…

计算机视觉与模式识别 · 计算机科学 2013-11-25 Abdul Kadir , Lukito Edi Nugroho , Adhi Susanto , Paulus Insap Santosa

We present a multi-head vision transformer approach for multi-label plant species prediction in vegetation plot images, addressing the PlantCLEF 2025 challenge. The task involves training models on single-species plant images while testing…

计算机视觉与模式识别 · 计算机科学 2025-08-15 Hanna Herasimchyk , Robin Labryga , Tomislav Prusina

We consider the problem of drawing multiple gene trees inside a single species tree in order to visualize multispecies coalescent trees. Specifically, the drawing of the species tree fills a rectangle in which each of its edges is…

离散数学 · 计算机科学 2022-11-01 Jonathan Klawitter , Felix Klesen , Moritz Niederer , Alexander Wolff

Identification of plant disease is usually done through visual inspection or during laboratory examination which causes delays resulting in yield loss by the time identification is complete. On the other hand, complex deep learning models…

计算机视觉与模式识别 · 计算机科学 2021-02-10 Nisar Ahmed , Hafiz Muhammad Shahzad Asif , Gulshan Saleem

For a global breeding organization, identifying the next generation of superior crops is vital for its success. Recognizing new genetic varieties requires years of in-field testing to gather data about the crop's yield, pest resistance,…

计算机视觉与模式识别 · 计算机科学 2021-08-03 Saba Moeinizade , Hieu Pham , Ye Han , Austin Dobbels , Guiping Hu

For deep learning practitioners, hyperparameter tuning for optimizing model performance can be a computationally expensive task. Though visualization can help practitioners relate hyperparameter settings to overall model performance,…

人机交互 · 计算机科学 2021-05-26 Hyekang Joo , Calvin Bao , Ishan Sen , Furong Huang , Leilani Battle

Leaf wetness detection is a crucial task in agricultural monitoring, as it directly impacts the prediction and protection of plant diseases. However, existing sensing systems suffer from limitations in robustness, accuracy, and…

计算机视觉与模式识别 · 计算机科学 2025-07-31 Yimeng Liu , Maolin Gan , Yidong Ren , Gen Li , Jingkai Lin , Younsuk Dong , Zhichao Cao