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We introduce a new method for finding network motifs: interesting or informative subgraph patterns in a network. Subgraphs are motifs when their frequency in the data is high compared to the expected frequency under a null model. To compute…

机器学习 · 计算机科学 2021-04-19 Peter Bloem , Steven de Rooij

We introduce a method to find network motifs in knowledge graphs. Network motifs are useful patterns or meaningful subunits of the graph that recur frequently. We extend the common definition of a network motif to coincide with a basic…

机器学习 · 统计学 2021-04-19 Peter Bloem

Many real-world networks describe systems in which interactions decay with the distance between nodes. Examples include systems constrained in real space such as transportation and communication networks, as well as systems constrained in…

统计力学 · 物理学 2009-11-10 Shalev Itzkovitz , Uri Alon

Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

定量方法 · 定量生物学 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

数据结构与算法 · 计算机科学 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

离散数学 · 计算机科学 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

Studying the topology of so-called real networks, that is networks obtained from sociological or biological data for instance, has become a major field of interest in the last decade. One way to deal with it is to consider that networks are…

应用统计 · 统计学 2010-07-27 Etienne Birmele

The identification of motifs--subgraphs that appear significantly more often in a particular network than in an ensemble of randomized networks--has become a ubiquitous method for uncovering potentially important subunits within networks…

分子网络 · 定量生物学 2010-08-27 Reid Ginoza , Andrew Mugler

Exploring statistics of locally connected subgraph patterns (also known as network motifs) has helped researchers better understand the structure and function of biological and online social networks (OSNs). Nowadays the massive size of…

社会与信息网络 · 计算机科学 2014-03-28 Pinghui Wang , John C. S. Lui , Bruno Ribeiro , Don Towsley , Junzhou Zhao , Xiaohong Guan

Studying the topology of so-called {\em real networks}, that is networks obtained from sociological or biological data for instance, has become a major field of interest in the last decade. One way to deal with it is to consider that…

应用统计 · 统计学 2010-11-23 Etienne Birmele

Characterizing motif (i.e., locally connected subgraph patterns) statistics is important for understanding complex networks such as online social networks and communication networks. Previous work made the strong assumption that the graph…

社会与信息网络 · 计算机科学 2015-02-25 Pinghui Wang , John C. S. Lui , Don Towsley

Motifs are the fundamental components of complex systems. The topological structure of networks representing complex systems and the frequency and distribution of motifs in these networks are intertwined. The complexities associated with…

社会与信息网络 · 计算机科学 2020-05-21 Ali Jazayeri , Christopher C. Yang

The observation that some subgraphs, called motifs, appear more often in real networks than in their randomized counterparts has attracted much attention in the scientific community. In the prevalent approach the detection of motifs is…

分子网络 · 定量生物学 2014-08-28 Anatol E. Wegner

Motivated by applications in social network community analysis, we introduce a new clustering paradigm termed motif clustering. Unlike classical clustering, motif clustering aims to minimize the number of clustering errors associated with…

社会与信息网络 · 计算机科学 2017-01-31 Pan Li , Hoang Dau , Gregory Puleo , Olgica Milenkovic

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

计算物理 · 物理学 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

Graphs are naturally used to describe the structures of various real-world systems in biology, society, computer science etc., where subgraphs or motifs as basic blocks play an important role in function expression and information…

社会与信息网络 · 计算机科学 2021-02-11 Jinhuan Wang , Pengtao Chen , Bin Ma , Jiajun Zhou , Zhongyuan Ruan , Guanrong Chen , Qi Xuan

Many real-world applications give rise to large heterogeneous networks where nodes and edges can be of any arbitrary type (e.g., user, web page, location). Special cases of such heterogeneous graphs include homogeneous graphs, bipartite,…

社会与信息网络 · 计算机科学 2019-05-14 Ryan A. Rossi , Nesreen K. Ahmed , Aldo Carranza , David Arbour , Anup Rao , Sungchul Kim , Eunyee Koh

Several natural and theoretical networks can be broken down into smaller portions, or subgraphs corresponding to neighborhoods. The more frequent of these neighborhoods can then be understood as motifs of the network, being therefore…

物理与社会 · 物理学 2022-04-21 Guilherme S. Domingues , Eric K. Tokuda , Luciano da F. Costa

Many data analysis problems rely on dynamic networks, such as social or communication network analyses. Providing a scalable overview of long sequences of such dynamic networks remains challenging due to the underlying large-scale data…

社会与信息网络 · 计算机科学 2022-08-26 Eren Cakmak , Johannes Fuchs , Dominik Jäckle , Tobias Schreck , Ulrik Brandes , Daniel Keim

Networks are a fundamental tool for modeling complex systems in a variety of domains including social and communication networks as well as biology and neuroscience. Small subgraph patterns in networks, called network motifs, are crucial to…

社会与信息网络 · 计算机科学 2018-01-08 Ashwin Paranjape , Austin R. Benson , Jure Leskovec
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