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Proteins evolve through complex sequence spaces, with fitness landscapes serving as a conceptual framework that links sequence to function. Fitness landscapes can be smooth, where multiple similarly accessible evolutionary paths are…

Random walks on multidimensional nonlinear landscapes are of interest in many areas of science and engineering. In particular, properties of adaptive trajectories on fitness landscapes determine population fates and thus play a central role…

种群与进化 · 定量生物学 2014-10-08 Michael Manhart , Alexandre V. Morozov

Using a simple model for the trail formation of ants, the relation between i)the schedule of feeding which represents the unsteady natural environment, ii)emerging patterns of trails connecting a nest with food resources, and iii)the…

种群与进化 · 定量生物学 2009-11-10 Tomomi Tao , Hiroyuki Nakagawa , Masato Yamasaki , Hiraku Nishimori

In evolution theory the concept of a fitness landscape has played an important role, evolution itself being portrayed as a hill-climbing process on a rugged landscape. In this article it is shown that in general, in the presence of other…

适应与自组织系统 · 物理学 2016-11-17 C. R. Stephens

With the increasing demand and complexity of networks, factors such as balancing the load, improving the performance, reducing delay and finding optimal path between nodes in a computer network have become crucial. The traditional routing…

网络与互联网体系结构 · 计算机科学 2016-10-17 Chandana M , Sanjeev Thakur

Living species, ranging from bacteria to animals, exist in environmental conditions that exhibit spatial and temporal heterogeneity which requires them to adapt. Risk-spreading through spontaneous phenotypic variations is a known concept in…

Fitness landscapes are mappings between genotypes, phenotypes, and fitness that shape evolution. In recent years, empirical work and theoretical models have greatly advanced our understanding of how populations navigate rugged fitness…

种群与进化 · 定量生物学 2026-04-21 Malvika Srivastava , Claudia Bank , Joachim Krug , Suman G. Das

Fitness landscapes are a useful concept to study the dynamics of meta-heuristics. In the last two decades, they have been applied with success to estimate the optimization power of several types of evolutionary algorithms, including genetic…

神经与进化计算 · 计算机科学 2020-01-31 Nuno M. Rodrigues , Sara Silva , Leonardo Vanneschi

In this study, we synthesize a novel dynamical approach for ant colonies enabling them to migrate to new nest sites in a self-organizing fashion. In other words, we realize ant colony migration as a self-organizing phenotype-level…

机器人学 · 计算机科学 2022-10-11 Matin Macktoobian

Geographic ranges of communities of species evolve in response to environmental, ecological, and evolutionary forces. Understanding the effects of these forces on species' range dynamics is a major goal of spatial ecology. Previous…

种群与进化 · 定量生物学 2022-02-02 Farshad Shirani , Judith R. Miller

Colonies of ants are systems of interacting living organisms in which interactions between individuals and their environment can produce a reliable performance of a complex tasks without the need for centralised control. Particularly…

生物物理 · 物理学 2015-08-28 Miriam Malíčková , Christian Yates , Katarína Boďová

Models for the behavior of ants and pedestrians are studied in an unified way in this paper. Each ant follows pheromone put by preceding ants, hence creating a trail on the ground, while pedestrians also try to follow others in a crowd for…

A significant challenge in nature-inspired algorithmics is the identification of specific characteristics of problems that make them harder (or easier) to solve using specific methods. The hope is that, by identifying these characteristics,…

神经与进化计算 · 计算机科学 2013-05-06 Matthew Crossley , Andy Nisbet , Martyn Amos

The observation and modeling of natural Complex Systems (CSs) like the human nervous system, the evolution or the weather, allows the definition of special abilities and models reusable to solve other problems. For instance, Genetic…

神经与进化计算 · 计算机科学 2008-12-18 Frédéric Guinand , Yoann Pigné

Applications of ACO algorithms to obtain better solutions for combinatorial optimization problems have become very popular in recent years. In ACO algorithms, group of agents repeatedly perform well defined actions and collaborate with…

神经与进化计算 · 计算机科学 2012-03-07 G. S. Raghavendra , N. Prasanna Kumar

Multiple sequence alignment is a key process in today's biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing some improbable evaluation functions. Our approach for addressing multiple…

定量方法 · 定量生物学 2008-12-18 Frédéric Guinand , Yoann Pigné

Fitness landscapes are genotype to fitness mappings commonly used in evolutionary biology and computer science which are closely related to spin glass models. In this paper, we study the NK model for fitness landscapes where the interaction…

种群与进化 · 定量生物学 2015-06-12 Stefan Nowak , Joachim Krug

We consider evolution of a large population, where fitness of each organism is defined by many phenotypical traits. These traits result from expression of many genes. We propose a new model of gene regulation, where gene expression is…

种群与进化 · 定量生物学 2016-09-29 John Reinitz , Sergey Vakulenko , Dmitri Grigoriev , Andreas Weber

Many real-world optimization problems occur in environments that change dynamically or involve stochastic components. Evolutionary algorithms and other bio-inspired algorithms have been widely applied to dynamic and stochastic problems.…

神经与进化计算 · 计算机科学 2020-01-30 Vahid Roostapour , Mojgan Pourhassan , Frank Neumann

Evolution in changing environments is an important, but little studied aspect of the theory of evolution. The idea of adaptive walks in fitness landscapes has triggered a vast amount of research and has led to many important insights about…

生物物理 · 物理学 2007-05-23 Claus O. Wilke
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