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Structure, composition and stability of ecological populations are shaped by the inter- and intra-species interactions within these communities. It remains to be fully understood how the interplay of these interactions with other factors,…

种群与进化 · 定量生物学 2023-01-16 Nava Leibovich , Jeremy Rothschild , Sidhartha Goyal , Anton Zilman

Diverse communities of competing species are generally characterized by substantial niche overlap and strongly stochastic dynamics. Abundance fluctuations are proportional to population size, so the dynamics of rare populations is slower.…

种群与进化 · 定量生物学 2024-10-02 David A. Kessler , Nadav M. Shnerb

The dynamics of two competing species in a finite size community is one of the most studied problems in population genetics and community ecology. Stochastic fluctuations lead, inevitably, to the extinction of one of the species, but the…

种群与进化 · 定量生物学 2016-11-30 Matan Danino , David A. Kessler , Nadav M. Shnerb

The functioning of animal as well as human societies fundamentally relies on cooperation. Yet, defection is often favorable for the selfish individual, and social dilemmas arise. Selection by individuals' fitness, usually the basic driving…

种群与进化 · 定量生物学 2009-09-26 Jonas Cremer , Tobias Reichenbach , Erwin Frey

In both natural and artificial studies, evolution is often seen as synonymous to natural selection. Individuals evolve under pressures set by environments that are either reset or do not carry over significant changes from previous…

种群与进化 · 定量生物学 2023-05-17 Eleni Nisioti , Clément Moulin-Frier

Ecological communities with many species can be classified into dynamical phases. In systems with all-to-all interactions, a phase where a fixed point is always reached and a dynamically-fluctuating phase have been found. The dynamics when…

种群与进化 · 定量生物学 2023-08-04 Stav Marcus , Ari M Turner , Guy Bunin

A fundamental goal of microbial ecology is to understand what determines the diversity, stability, and structure of microbial ecosystems. The microbial context poses special conceptual challenges because of the strong mutual influences…

生物物理 · 物理学 2019-03-06 Robert Marsland , Wenping Cui , Joshua Goldford , Alvaro Sanchez , Kirill Korolev , Pankaj Mehta

Niche and neutral theory are two prevailing, yet much debated, ideas in ecology proposed to explain the patterns of biodiversity. Whereas niche theory emphasizes selective differences between species and interspecific interactions in…

种群与进化 · 定量生物学 2021-03-05 Jim Wu , Pankaj Mehta , David Schwab

In complex ecological communities, species may self-organize into clusters or clumps where highly similar species can coexist. The emergence of such species clusters can be captured by the interplay between neutral and niche theories. Based…

统计力学 · 物理学 2026-04-16 Shing Yan Li , Mehran Kardar , Zhijie Feng , Washington Taylor

Ecosystems often undergo abrupt regime shifts in response to gradual external changes. These shifts are theoretically understood as a regime switch between alternative stable states of the ecosystem dynamical response to smooth changes in…

种群与进化 · 定量生物学 2015-02-18 Jose A. Capitan , Jose A. Cuesta

We present a non-neutral stochastic model for the dynamics taking place in a meta-community ecosystems in presence of migration. The model provides a framework for describing the emergence of multiple ecological scenarios and behaves in two…

种群与进化 · 定量生物学 2015-05-13 Ginestra Bianconi , Luca Ferretti , Silvio Franz

The evolutionary and ecological processes behind the origin of species are among the most fundamental problems in biology. In fact, many theoretical hypothesis on different type of speciation have been proposed. In particular, models of…

种群与进化 · 定量生物学 2018-11-20 Niccolo Anceschi , Jorge Hidalgo , Tommaso Bellini , Amos Maritan , Samir Suweis

In complex ecosystems such as microbial communities, there is constant ecological and evolutionary feedback between the residing species and the environment occurring on concurrent timescales. Species respond and adapt to their surroundings…

种群与进化 · 定量生物学 2023-10-17 Jim Wu , David J. Schwab , Trevor GrandPre

Environmental fluctuations have important consequences in the organization of ecological communities, and understanding how such a variability influences the biodiversity of an ecosystem is a major question in ecology. In this paper, we…

种群与进化 · 定量生物学 2016-11-16 Jorge Hidalgo , Samir Suweis , Amos Maritan

Many-variable differential equations with random coefficients provide powerful models for the dynamics of many interacting species in ecology. These models are known to exhibit a dynamical phase transition from a phase where population…

统计力学 · 物理学 2025-02-19 Thibaut Arnoulx de Pirey , Guy Bunin

We investigate the evolutionary dynamics of a finite population of RNA sequences adapting to a neutral fitness landscape. Despite the lack of differential fitness between viable sequences, we observe typical properties of adaptive…

种群与进化 · 定量生物学 2007-05-23 Robert Forster , Christoph Adami , Claus O. Wilke

Synergistic and antagonistic interactions in multi-species populations - such as resource sharing and competition - result in remarkably diverse behaviors in populations of interacting cells, such as in soil or human microbiomes, or clonal…

种群与进化 · 定量生物学 2019-10-15 MattheW Badali , Anton Zilman

We study a stochastic community model able to interpolate from a neutral regime to a niche partitioned regime upon varying a single parameter tuning the intensity of niche stabilization, namely the difference between intraspecific and…

种群与进化 · 定量生物学 2013-09-17 Simone Pigolotti , Massimo Cencini

While Neutral Theory famously describes the number of discrete genetic differences in populations, we consider the number of genetic backgrounds under which such differences are observed - setting limits to the generalizability of their…

种群与进化 · 定量生物学 2023-03-21 Andre F. Ribeiro

Neutral theories have played a crucial and revolutionary role in fields such as population genetics and biogeography. These theories are critical by definition, in the sense that the overall growth rate of each single allele/species/type…

统计力学 · 物理学 2015-06-23 Claudio Borile , Daniel Molina-Garcia , Amos Maritan , Miguel A. Muñoz
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