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A minimalist simulation model for lipid bilayers is presented. Each lipid is represented by a flexible chain of beads in implicit solvent. The hydrophobic effect is mimicked through an intermolecular pair potential localized at the…

统计力学 · 物理学 2009-11-11 Grace Brannigan , Peter F. Philips , Frank L. H. Brown

We consider the hydrodynamics of lipid bilayers containing transmembrane proteins of arbitrary shape. This biologically-motivated problem is relevant to the cell membrane, whose fluctuating dynamics play a key role in phenomena ranging from…

软凝聚态物质 · 物理学 2016-10-10 Andrew Callan-Jones , Marc Durand , Jean-Baptiste Fournier

We study a model of a lipid bilayer membrane described by two order parameters: the chemical composition described using the Gaussian model and the spatial configuration described with the elastic deformation model of a membrane with a…

软凝聚态物质 · 物理学 2022-06-08 Piotr Nowakowski , Bernd Henning Stumpf , Ana-Sunčana Smith , Anna Maciołek

The buckling of elastic bodies is a common phenomenon in the mechanics of solids. Wrinkling of membranes can often be interpreted as buckling under constraints that prohibit large amplitude deformation. We present a combination of analytic…

软凝聚态物质 · 物理学 2007-05-23 A. Concha , J. W. McIver , P. Mellado , D. Clarke , O. Tchernyshyov , R. L. Leheny

Bridging the gap between atomistic detail and continuum mechanics is a central challenge in modeling biological membranes, particularly for mesoscopic phenomena spanning large length and time scales. In this work, we introduce a new,…

软凝聚态物质 · 物理学 2026-03-02 Pietro Sillano , Siewert-Jan Marrink , Timon Idema

We investigate pores in fluid membranes by molecular dynamics simulations of an amphiphile-solvent mixture, using a molecular coarse-grained model. The amphiphilic membranes self-assemble into a lamellar stack of amphiphilic bilayers…

软凝聚态物质 · 物理学 2009-11-11 Claire Loison , Michel Mareschal , Friederike Schmid

Biomembranes consisting of two opposing phospholipid monolayers, which comprise the so-called lipid bilayer, are largely responsible for the dual solid-fluid behavior of individual cells and viruses. Quantifying the mechanical…

生物物理 · 物理学 2024-05-27 Naoki Takeishi , Masaya Santo , Naoto Yokoyama , Shigeo Wada

For many biotechnological applications it would be useful to better understand the effects produced by electric fields on lipid membranes. This review discusses several aspects of the electrostatic properties of a planar lipid membrane with…

软凝聚态物质 · 物理学 2014-11-25 Falko Ziebert , David Lacoste

The equilibrium and fluctuation methods for determining the surface tension, $\sigma$, and bending modulus, $\kappa$, of a bilayer membrane with a fixed projected area are discussed. In the fluctuation method the elastic coefficients…

统计力学 · 物理学 2009-11-10 Oded Farago , Philip Pincus

We examine the budding of a nanoscale particle through a lipid bilayer using molecular dynamics simulations, free energy calculations, and an elastic theory, with the aim of determining the extent to which equilibrium elasticity theory can…

亚细胞过程 · 定量生物学 2012-02-22 Teresa Ruiz-Herrero , Enrique Velasco , Michael F. Hagan

We use coarse-grained Monte Carlo simulations to study the elastic properties of charged membranes in solutions of monovalent and pentavalent counterions. The simulation results of the two cases reveal trends opposite to each other. The…

软凝聚态物质 · 物理学 2014-09-12 Yotam Y. Avital , Niels Grønbech-Jensen , Oded Farago

A new model is proposed to explain coiling of myelins composed of fluid bilayers. This model allows the constituent bilayer cylinders of a myelin to be non-coaxial and the bilayer lateral tension to vary from bilayer to bilayer. The…

软凝聚态物质 · 物理学 2009-11-11 Jung-Ren Huang

Heterogeneities in the cell membrane due to coexisting lipid phases have been conjectured to play a major functional role in cell signaling and membrane trafficking. Thereby the material properties of multiphase systems, such as the line…

软凝聚态物质 · 物理学 2013-04-17 Stefan Semrau , Timon Idema , Laurent Holtzer , Thomas Schmidt , Cornelis Storm

We use numerical simulations to show how noninteracting hard particles binding to a deformable elastic shell may self-assemble into a variety of linear patterns. This is a result of the nontrivial elastic response to deformations of shells.…

软凝聚态物质 · 物理学 2011-02-25 Andela Šarić , Angelo Cacciuto

We present a novel approach to probe elastic properties of polyelectrolyte multilayer microcapsules. The method is based on measurements of the capsule load-deformation curves with the atomic force microscope. The experiment suggests that…

软凝聚态物质 · 物理学 2009-11-10 V. V. Lulevich , D. Andrienko , O. I. Vinogradova

The entropic effects of anchored polymers on biomembranes are studied using simulations of a meshless membrane model combined with anchored linear polymer chains. The bending rigidity and spontaneous curvature are investigated for anchored…

软凝聚态物质 · 物理学 2015-02-18 Hao Wu , Hayato Shiba , Hiroshi Noguchi

We investigate the properties of membranes under tension by Monte-Carlo simulations of a generic coarse-grained model for lipid bilayers. We give a comprising overview of the behavior of several membrane characteristics, such as the area…

生物物理 · 物理学 2010-03-17 Jörg Neder , Beate West , Peter Nielaba , Friederike Schmid

Elastic membranes composed of paramagnetic beads offer the possibility of assembling versatile actuators operated autonomously by external magnetic fields. Here we develop a theoretical framework to study shapes of such paramagnetic…

软凝聚态物质 · 物理学 2018-09-12 Pablo Vázquez-Montejo , Mónica Olvera de la Cruz

We propose theoretical and numerical analyses of smart bending deformation of a dielectric-elastic bilayer in response to a voltage, based on the nonlinear theory of electro-elasticity and the associated linearized incremental field theory.…

软凝聚态物质 · 物理学 2019-07-30 Yipin Su , Bin Wu , Weiqiu Chen , Michel Destrade

We present a simple and computationally efficient coarse-grained and solvent-free model for simulating lipid bilayer membranes. In order to be used in concert with particle-based reaction-diffusion simulations, the model is purely based on…

生物物理 · 物理学 2018-01-31 Mohsen Sadeghi , Thomas R. Weikl , Frank Noé