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相关论文: Signal Transmission Across Tile Assemblies: 3D Sta…

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The well-studied Two-Handed Tile Assembly Model (2HAM) is a model of tile assembly in which pairs of large assemblies can bind, or self-assemble, together. In order to bind, two assemblies must have matching glues that can simultaneously…

In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla, Liu, and Seeman to…

In this paper, we extend existing results about simulation and intrinsic universality in a model of tile-based self-assembly. Namely, we work within the 2-Handed Assembly Model (2HAM), which is a model of self-assembly in which assemblies…

计算几何 · 计算机科学 2015-03-17 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

In this paper, we investigate shape-assembling power of a tile-based model of self-assembly called the Signal-Passing Tile Assembly Model (STAM). In this model, the glues that bind tiles together can be turned on and off by the binding…

形式语言与自动机理论 · 计算机科学 2022-06-09 Andrew Alseth , Daniel Hader , Matthew J. Patitz

In this paper we present a model containing modifications to the Signal-passing Tile Assembly Model (STAM), a tile-based self-assembly model whose tiles are capable of activating and deactivating glues based on the binding of other glues.…

新兴技术 · 计算机科学 2022-03-30 Andrew Alseth , Daniel Hader , Matthew J. Patitz

In this paper, we investigate the abilities of systems of self-assembling tiles which can each pass a constant number of signals to their immediate neighbors to create replicas of input shapes. Namely, we work within the Signal-passing Tile…

新兴技术 · 计算机科学 2022-04-05 Andrew Alseth , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Self-assembly is a process which is ubiquitous in natural, especially biological systems. It occurs when groups of relatively simple components spontaneously combine to form more complex structures. While such systems have inspired a large…

计算几何 · 计算机科学 2018-07-19 Jerome Durand-Lose , Jacob Hendricks , Matthew J. Patitz , Ian Perkins , Michael Sharp

In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…

新兴技术 · 计算机科学 2014-03-10 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Scott M. Summers

In the abstract Tile Assembly Model (aTAM) square tiles self-assemble, autonomously binding via glues on their edges, to form structures. Algorithmic aTAM systems can be designed in which the patterns of tile attachments are forced to…

新兴技术 · 计算机科学 2022-11-10 Andrew Alseth , Matthew J. Patitz

We introduce a new model of algorithmic tile self-assembly called size-dependent assembly. In previous models, supertiles are stable when the total strength of the bonds between any two halves exceeds some constant temperature. In this…

计算几何 · 计算机科学 2015-09-24 Sándor P. Fekete , Robert T. Schweller , Andrew Winslow

We show that the Tile Assembly Model exhibits a strong notion of universality where the goal is to give a single tile assembly system that simulates the behavior of any other tile assembly system. We give a tile assembly system that is…

计算复杂性 · 计算机科学 2016-09-08 David Doty , Jack H. Lutz , Matthew J. Patitz , Scott M. Summers , Damien Woods

In the abstract Tile Assembly Model (aTAM), the phenomenon of cooperation occurs when the attachment of a new tile to a growing assembly requires it to bind to more than one tile already in the assembly. Often referred to as…

新兴技术 · 计算机科学 2014-03-18 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Algorithmic self-assembly occurs when disorganized components autonomously combine to form structures and, by their design and the dynamics of the system, are forced to follow the execution of algorithms. Motivated by applications in…

计算几何 · 计算机科学 2023-05-05 Daniel Hader , Matthew J. Patitz

In this paper, we prove that in the abstract Tile Assembly Model (aTAM), an accretion-based model which only allows for a single tile to attach to a growing assembly at each step, there are no tile assembly systems capable of…

新兴技术 · 计算机科学 2018-07-18 Jacob Hendricks , Joseph Opseth , Matthew Patitz , Scott Summers

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

计算复杂性 · 计算机科学 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki

Since its introduction by Erik Winfree in 1998, the abstract Tile Assembly Model (aTAM) has inspired a wealth of research. As an abstract model for tile based self-assembly, it has proven to be remarkably powerful and expressive in terms of…

数学软件 · 计算机科学 2015-03-18 Matthew J. Patitz

Tile assembly systems in the abstract Tile Assembly Model (aTAM) are computationally universal and capable of building complex shapes, but DNA-based implementations encounter formidable error rates that stifle this theoretical potential.…

计算几何 · 计算机科学 2024-05-13 Phillip Drake , Daniel Hader , Matthew J. Patitz

The Tile Automata (TA) model describes self-assembly systems in which monomers can build structures and transition with an adjacent monomer to change their states. This paper shows that seeded TA is a non-committal intrinsically universal…

元胞自动机与格子气 · 物理学 2024-07-17 Tim Gomez , Elise Grizzell , Asher Haun , Ryan Knobel , Tom Peters , Robert Schweller , Tim Wylie

The algorithmic self-assembly of shapes has been considered in several models of self-assembly. For the problem of \emph{shape construction}, we consider an extended version of the Two-Handed Tile Assembly Model (2HAM), which contains…

计算几何 · 计算机科学 2016-08-18 Austin Luchsinger , Robert Schweller , Tim Wylie

We investigate the power of the Wang tile self-assembly model at temperature 1, a threshold value that permits attachment between any two tiles that share even a single bond. When restricted to deterministic assembly in the plane, no…

计算复杂性 · 计算机科学 2015-03-13 Matthew Cook , Yunhui Fu , Robert T. Schweller
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