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Circadian rhythms are acquired through evolution to increase the chances for survival through synchronizing with the daylight cycle. Reliable synchronization is realized through two trade-off properties: regularity to keep time precisely,…

生物物理 · 物理学 2014-10-02 Yoshihiko Hasegawa , Masanori Arita

Circadian clocks are biochemical oscillators that allow organisms to estimate the time of the day. These oscillators are inherently noisy due to the discrete nature of the reactants and the stochastic character of their interactions. To…

生物物理 · 物理学 2018-03-21 Michele Monti , David K. Lubensky , Pieter Rein ten Wolde

The circadian clocks keeping time of day in many living organisms rely on self-sustained biochemical oscillations which can be entrained by external cues, such as light, to the 24-hour cycle induced by Earth rotation. However, environmental…

定量方法 · 定量生物学 2015-05-20 Benjamin Pfeuty , Quentin Thommen , Marc Lefranc

Circadian clocks are the central timekeepers of life, allowing cells to anticipate changes between day and night. Experiments in recent years have revealed that circadian clocks can be highly stable, raising the question how reliably they…

分子网络 · 定量生物学 2016-06-22 Michele Monti , Pieter Rein ten Wolde

A driven linear oscillator and a feedback mechanism are two necessary elements of any classical periodic clock. Here, we introduce a novel, fully quantum clock using a driven oscillator in the quantum regime and coherent quantum feedback.…

量子物理 · 物理学 2024-10-31 Stefan Zeppetzauer , Leonardo Assis Morais , Xin He , Gerard Milburn , Arkady Fedorov

Circadian clocks exhibit the robustness of period and plasticity of phase against environmental changes such as temperature and nutrient conditions. Thus far, however, it is unclear how both are simultaneously achieved. By investigating…

分子网络 · 定量生物学 2015-12-08 Tetsuhiro S. Hatakeyama , Kunihiko Kaneko

We study the impact of light on the mammalian circadian system using the theory of phase response curves. Using a recently developed ansatz we derive a low-dimensional macroscopic model for the core circadian clock in mammals.…

神经元与认知 · 定量生物学 2019-10-14 Kevin M. Hannay , Daniel B. Forger , Victoria Booth

The gene networks that comprise the circadian clock modulate biological function across a range of scales, from gene expression to performance and adaptive behaviour. The clock functions by generating endogenous rhythms that can be…

分子网络 · 定量生物学 2012-10-25 Ozgur Akman , Steven Watterson , Andrew Parton , Nigel Binns , Andrew Millar , Peter Ghazal

The length of the solar activity cycle fluctuates considerably. The temporal evolution of the corresponding cycle phase, that is, the deviation of the epochs of activity minima or maxima from strict periodicity, provides relevant…

太阳与恒星天体物理 · 物理学 2023-03-15 E. Weisshaar , R. H. Cameron , M. Schüssler

The mammalian circadian system comprises a network of cell-autonomous oscillators, spanning from the central clock in the brain to peripheral clocks in other organs. These clocks are tightly coordinated to orchestrate rhythmic physiological…

适应与自组织系统 · 物理学 2022-12-29 Yitong Huang , Yuanzhao Zhang , Rosemary Braun

A fundamental description of time can be consistent not only with the usual monotonic behavior but also with a periodic physical clock variable, coupled to the degrees of freedom of a system evolving in time. Generically, one would in fact…

量子物理 · 物理学 2022-05-25 Martin Bojowald , Luiz Martinez , Garrett Wendel

Living organisms need to be sensitive to a changing environment while also ignoring uninformative environmental fluctuations. Here, we show that the circadian clock in \textit{Synechococcus elongatus} can naturally tune its environmental…

分子网络 · 定量生物学 2019-03-19 Kabir Husain , Weerapat Pittayakanchit , Gopal Pattanayak , Michael J Rust , Arvind Murugan

Biological oscillators coordinate individual cellular components so that they function coherently and collectively. They are typically composed of multiple feedback loops, and period mismatch is unavoidable in biological implementations. We…

生物物理 · 物理学 2013-05-06 Yoshihiko Hasegawa , Masanori Arita

Circadian rhythms in mammals are controlled by the neurons located in the suprachiasmatic nucleus of the hypothalamus. In physiological conditions, the system of neurons is very efficiently entrained by the 24-hour light-dark cycle. Most of…

生物物理 · 物理学 2010-12-30 Niko Komin , Adrian C. Murza , Emilio Hernandez-Garcia , Raul Toral

The circadian clock is the molecular mechanism responsible for the adaptation to daily rhythms in living organisms. Oscillations and fluctuations in environmental conditions regulate the circadian clock through signaling pathways. We study…

生物物理 · 物理学 2019-03-26 Andrea Auconi , Patrick Pett , Edda Klipp , Hanspeter Herzel

Circadian rhythms are biological rhythms of approximately 24 h that persist even under constant conditions without environmental daily cues. The molecular circadian clock machinery generates the physiological rhythms, which can be…

分子网络 · 定量生物学 2022-10-05 Hotaka Kaji , Fumito Mori , Hiroshi Ito

Autonomous circadian clocks drive daily rhythms in physiology and behaviour. A network of coupled neurons, the suprachiasmatic nucleus (SCN), serves as a robust self-sustained circadian pacemaker. Synchronization of this timer to the…

适应与自组织系统 · 物理学 2015-05-28 G. Bordyugov , A. E. Granada , H. Herzel

Periodic forcing of nonlinear oscillators leads to a large number of dynamic behaviors. The coupling of the cell-cycle to the circadian clock provides a biological realization of such forcing. Using high throughput single-cell microscopy,…

Circadian clocks must be able to entrain to time-varying signals to keep their oscillations in phase with the day-night rhythm. On the other hand, they must also exhibit input compensation: their period must remain about one day in…

生物物理 · 物理学 2017-07-13 Joris Paijmans , David K Lubensky , Pieter Rein ten Wolde

To estimate the time, many organisms, ranging from cyanobacteria to animals, employ a circadian clock which is based on a limit-cycle oscillator that can tick autonomously with a nearly 24h period. Yet, a limit-cycle oscillator is not…

分子网络 · 定量生物学 2018-08-22 Michele Monti , David K Lubensky , Pieter Rein ten Wolde
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