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相关论文: Formation of the frozen core in critical Boolean N…

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We derive analytically the scaling behavior in the thermodynamic limit of the number of nonfrozen and relevant nodes in the most general class of critical Kauffman networks for any number of inputs per node, and for any choice of the…

无序系统与神经网络 · 物理学 2008-07-02 Tamara Mihaljev , Barbara Drossel

We study critical random Boolean networks with two inputs per node that contain only canalyzing functions. We present a phenomenological theory that explains how a frozen core of nodes that are frozen on all attractors arises. This theory…

统计力学 · 物理学 2009-11-11 U. Paul , V. Kaufman , B. Drossel

We derive mostly analytically the scaling behavior of the number of nonfrozen and relevant nodes in critical Kauffman networks (with two inputs per node) in the thermodynamic limit. By defining and analyzing a stochastic process that…

统计力学 · 物理学 2009-11-11 Viktor Kaufman , Tamara Mihaljev , Barbara Drossel

In this paper, we analyse large random Boolean networks in terms of a constraint satisfaction problem. We first develop an algorithmic scheme which allows to prune simple logical cascades and under-determined variables, returning thereby…

统计力学 · 物理学 2009-11-11 L. Correale , M. Leone , A. Pagnani , M. Weigt , R. Zecchina

We obtain the phase diagram of random Boolean networks with nested canalizing functions. Using the annealed approximation, we obtain the evolution of the number $b_t$ of nodes with value one, and the network sensitivity $\lambda$, and we…

生物物理 · 物理学 2010-12-17 Tiago P. Peixoto

Chaos control in Random Boolean networks is implemented by freezing part of the network to drive it from chaotic to ordered phase. However, controlled nodes are only viewed as passive blocks to prevent perturbation spread. This paper…

元胞自动机与格子气 · 物理学 2015-05-20 Nan Jiang , Shijian Chen

Polar codes can theoretically achieve very competitive Frame Error Rates. In practice, their performance may depend on the chosen decoding procedure, as well as other parameters of the communication system they are deployed upon. As a…

机器学习 · 计算机科学 2021-05-12 Mathieu Léonardon , Vincent Gripon

Random Boolean networks, the Kauffman model, are revisited by means of a novel decimation algorithm, which reduces the networks to their dynamical cores. The average size of the removed part, the stable core, grows approximately linearly…

统计力学 · 物理学 2009-11-07 S. Bilke , F. Sjunnesson

The dynamical organization in the presence of noise of a Boolean neural network with random connections is analyzed. For low levels of noise, the system reaches a stationary state in which the majority of its elements acquire the same…

无序系统与神经网络 · 物理学 2007-05-23 Cristian Huepe , Maximino Aldana

We investigate analytically and numerically the dynamical properties of critical Boolean networks with power-law in-degree distributions. When the exponent of the in-degree distribution is larger than 3, we obtain results equivalent to…

无序系统与神经网络 · 物理学 2009-11-13 Barbara Drossel , Florian Greil

The recently measured yeast transcriptional network is analyzed in terms of simplified Boolean network models, with the aim of determining feasible rule structures, given the requirement of stable solutions of the generated Boolean…

分子网络 · 定量生物学 2009-11-10 Stuart Kauffman , Carsten Peterson , Björn Samuelsson , Carl Troein

Random Boolean networks, originally invented as models of genetic regulatory networks, are simple models for a broad class of complex systems that show rich dynamical structures. From a biological perspective, the most interesting networks…

无序系统与神经网络 · 物理学 2009-11-07 Joshua E. S. Socolar , Stuart A. Kauffman

Standard Random Boolean Networks display an order-disorder phase transition. We add to the standard Random Boolean Networks a disconnection rule which couples the control and order parameters. By this way, the system is driven to the…

无序系统与神经网络 · 物理学 2009-11-07 Bartolo Luque , Fernando J. Ballesteros , Enrique M. Muro

It is an increasingly important problem to study conditions on the structure of a network that guarantee a given behavior for its underlying dynamical system. In this paper we report that a Boolean network may fall within the chaotic…

分子网络 · 定量生物学 2008-11-04 Winfried Just , German Enciso

The determination and classification of fixed points of large Boolean networks is addressed in terms of constraint satisfaction problem. We develop a general simplification scheme that, removing all those variables and functions belonging…

无序系统与神经网络 · 物理学 2009-11-10 L. Correale , M. Leone , A. Pagnani , M. Weigt , R. Zecchina

We present and discuss the results of an experimental analysis in the design of Boolean networks by means of genetic algorithms. A population of networks is evolved with the aim of finding a network such that the attractor it reaches is of…

神经与进化计算 · 计算机科学 2011-02-01 Andrea Roli , Cristian Arcaroli , Marco Lazzarini , Stefano Benedettini

We investigate the effect of noise on Random Boolean Networks. Noise is implemented as a probability $p$ that a node does not obey its deterministic update rule. We define two order parameters, the long-time average of the Hamming distance…

生物物理 · 物理学 2009-11-13 Tiago P. Peixoto , Barbara Drossel

Boolean Networks have been used to study numerous phenomena, including gene regulation, neural networks, social interactions, and biological evolution. Here, we propose a general method for determining the critical behavior of Boolean…

无序系统与神经网络 · 物理学 2009-11-11 Andre A. Moreira , Luis A. N. Amaral

During the last few years an area of active research in the field of complex systems is that of their information storing and processing abilities. Common opinion has it that the most interesting beaviour of these systems is found ``at the…

adap-org · 物理学 2007-05-23 Bartolo Luque , Antonio Ferrera

Canalization is a classic concept in Developmental Biology that is thought to be an important feature of evolving systems. In a Boolean network it is a form of network robustness in which a subset of the input signals control the behavior…

分子网络 · 定量生物学 2015-05-28 Matthew D. Reichl , Kevin E. Bassler
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