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Whole-brain biological neural networks naturally support the learning and control of whole-body movements. However, the use of brain connectomes as neural network controllers in embodied reinforcement learning remains unexplored. We…

机器学习 · 计算机科学 2026-03-10 Zehao Jin , Yaoye Zhu , Chen Zhang , Yanan Sui

The first step to understanding brain function is to determine the brain's network structure. We report a three-dimensional analysis of the brain network of the fruit fly Drosophila melanogaster by synchrotron-radiation tomographic…

神经元与认知 · 定量生物学 2016-09-09 Ryuta Mizutani , Rino Saiga , Akihisa Takeuchi , Kentaro Uesugi , Yoshio Suzuki

The cell nucleus is enveloped by a complex membrane, whose wrinkling has been implicated in disease and cellular aging. The biophysical dynamics and spectral evolution of nuclear wrinkling during multicellular development remain poorly…

Like a rocket being propelled into space, evolution has engineered flies to launch into adulthood via multiple stages. Flies develop and deploy two distinct bodies, linked by the transformative process of metamorphosis. The fly larva is a…

神经元与认知 · 定量生物学 2022-01-12 Sweta Agrawal , John C Tuthill

Flow generated noise are caused shear flows and, hence, they can be used as feedback to control the flow. Existing flow control uses state variables like velocity, pressure, or vorticity, none use acoustic observables as the primary control…

流体动力学 · 物理学 2026-05-12 Siddharth Rout , Khai Phan , Chao-An Lin

Due to aerodynamic instabilities, stabilizing flapping flight requires ever-present fast corrective actions. Here we investigate how flies control body roll angle, their most susceptible degree of freedom. We glue a magnet to each fly,…

生物物理 · 物理学 2014-07-31 Tsevi Beatus , John M. Guckenheimer , Itai Cohen

Flying insects execute aerial maneuvers through subtle manipulations of their wing motions. Here, we measure the free flight kinematics of fruit flies and determine how they modulate their wing pitching to induce sharp turns. By analyzing…

生物物理 · 物理学 2015-05-14 Attila J. Bergou , Leif Ristroph , John Guckenheimer , Itai Cohen , Z. Jane Wang

During embryogenesis tissue layers continuously rearrange and fold into specific shapes. Developmental biology identified patterns of gene expression and cytoskeletal regulation underlying local tissue dynamics, but how actions of multiple…

组织与器官 · 定量生物学 2017-01-26 Sebastian J Streichan , Matthew F Lefebvre , Nicholas Noll , Eric F Wieschaus , Boris I Shraiman

We demonstrate the first-ever nontrivial, biologically realistic connectome simulated on neuromorphic computing hardware. Specifically, we implement the whole-brain connectome of the adult Drosophila melanogaster (fruit fly) from the…

分布式、并行与集群计算 · 计算机科学 2025-08-26 Felix Wang , Bradley H. Theilman , Fred Rothganger , William Severa , Craig M. Vineyard , James B. Aimone

Mitosis in the early syncytial Drosophila embryo is highly correlated in space and time, as manifested in mitotic wavefronts that propagate across the embryo. In this paper we investigate the idea that the embryo can be considered a…

The feedback between mechanical and chemical signals plays a key role in controlling many biological processes and collective cell behavior. Here we focus on the emergence of spatiotemporal density waves in a one-dimensional "cell train."…

生物物理 · 物理学 2025-02-12 Toshi Parmar , Liam P. Dow , Beth L. Pruitt , M. Cristina Marchetti

The circadian clock can adapt itself to external cues, but the molecular mechanisms and regulatory networks governing circadian oscillations' transient adjustments are still largely unknown. Here we consider the specific case of circadian…

分子网络 · 定量生物学 2023-04-18 Ziyu Zhao , Dae-Sung Hwangbo , Sumit Saurabh , Clark Rosensweig , Ravi Allada , William L. Kath , Rosemary Braun

Cyclic motions in vertebrates, including heart beating, breathing and walking, are derived by a network of biological oscillators having fascinating features such as entrainment, environment adaptation, and robustness. These features…

适应与自组织系统 · 物理学 2021-11-24 Venus Pasandi , Aiko Dinale , Mehdi Keshmiri , Daniele Pucci

Spatially distributed limited-cycle oscillators are seen in various physical and biological systems. In internal organs, mechanical motions are induced by the stimuli of spatially distributed limit-cycle oscillators. We study several…

适应与自组织系统 · 物理学 2017-04-05 Hidestugu Sakaguchi , Yuuki Mukae

Rhythmic fluctuations in acoustic energy and accompanying neuronal excitations in cortical oscillations are characteristic of human speech, yet whether a corresponding rhythmicity inheres in the articulatory movements that generate speech…

神经元与认知 · 定量生物学 2025-12-05 Adamantios I. Gafos , Stephan R. Kuberski

Embryonic tissues deform across broad spatial and temporal scales and relax stress through active rearrangements. A quantitative link between cell-scale activity, spatial forcing, and emergent tissue-scale mechanics remains incomplete.…

生物物理 · 物理学 2025-12-18 Sahil Islam , Mohd. Suhail Rizvi , Anupam Gupta

Embryonic development relies on the formation of sharp, precise gene expression boundaries. In the fruit fly Drosophila melanogaster, boundary formation has been proposed to occur at a dynamical critical point. Yet, in the paradigmatic case…

生物物理 · 物理学 2025-05-19 Michael Vennettilli , Krishna P. Ramachandran , Andrew Mugler

We develop a framework for the general interpretation of the stochastic dynamical system near a limit cycle. Such quasi-periodic dynamics are commonly found in a variety of nonequilibrium systems, including the spontaneous oscillations of…

统计力学 · 物理学 2018-10-30 Janaki Sheth , Dolores Bozovic , Alex Levine

The natural wind environment that volant insects encounter is unsteady and highly complex, posing significant flight control and stability challenges. Unsteady airflows can range from structured chains of discrete vortices shed in the wake…

Developmental processes in multicellular organisms occur far from equilibrium, yet produce complex patterns with astonishing reproducibility. We measure the precision and reproducibility of bilaterally symmetric fly wings across the natural…

组织与器官 · 定量生物学 2013-09-25 Laurent Abouchar , Mariela D. Petkova , Cynthia R. Steinhardt , Thomas Gregor