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We calculate the configurational entropy S_conf for the SPC/E model of water for state points covering a large region of the (T,rho) plane. We find that (i) the (T,rho) dependence of S_conf correlates with the diffusion constant and (ii)…

软凝聚态物质 · 物理学 2012-03-08 Antonio Scala , Francis W. Starr , Emilia La Nave , Francesco Sciortino , H. Eugene Stanley

Anomalous behaviour of the excess entropy ($S_e$) and the associated scaling relationship with diffusivity are compared in liquids with very different underlying interactions but similar water-like anomalies: water (SPC/E and TIP3P models),…

软凝聚态物质 · 物理学 2010-05-04 Manish Agarwal , Murari Singh , Ruchi Sharma , Mohammad Parvez Alam , Charusita Chakravarty

Recently, an analytical expression for the system size dependence and direction-dependence of self-diffusion coefficients for neat liquids due to hydrodynamic interactions has been derived for molecular dynamics (MD) simulations using…

软凝聚态物质 · 物理学 2023-09-12 Johanna Busch , Dietmar Paschek

Context. The diffusion of volatile species on amorphous solid water ice affects the chemistry on dust grains in the interstellar medium as well as the trapping of gases enriching planetary atmospheres or present in cometary material. Aims.…

We use molecular dynamics simulations of the SPC-E model of liquid water to derive probability distributions for water density fluctuations in probe volumes of different shapes and sizes, both in the bulk as well as near hydrophobic and…

统计力学 · 物理学 2014-08-05 Amish J. Patel , David Chandler

The linear response description for impurity diffusion in a granular fluid undergoing homogeneous cooling is developed in the preceeding paper. The formally exact Einstein and Green-Kubo expressions for the self-diffusion coefficient are…

软凝聚态物质 · 物理学 2009-11-07 James Lutsko , J. Javier Brey , James W. Dufty

We investigate the behavior of the shear viscosity $\eta(p)$ and the mass-dependent diffusion coefficient $D(m,p)$ in the context of a simple model that, as the crosslink density $p$ is increased, undergoes a continuous transition from a…

统计力学 · 物理学 2007-05-23 Sune Norhoj Jespersen , Michael Plischke

A new five point potential for liquid water, TIP5P/2018, is presented along with the techniques used to derive its charges from ab initio per-molecule electrostatic potentials in the liquid phase using the split charge equilibration (SQE)…

软凝聚态物质 · 物理学 2021-12-08 Yuriy Khalak , Bjoern Baumeier , Mikko Karttunen

We study the evolution of dynamic fluctuations averaged over different space lengths and time scales to characterize spatially and temporally heterogeneous behavior of TIP4P/2005 water in liquid and supercooled states. Analysing a million…

We report on measurements of self-diffusion coefficients in discrete numerical simulations of steady, homogeneous, collisional shearing flows of nearly identical, frictional, inelastic spheres. We focus on a range of relatively high solid…

软凝聚态物质 · 物理学 2021-04-01 Riccardo Artoni , Michele Larcher , James Jenkins , Patrick Richard

Efficient large-scale computer simulations of aqueous solutions require the use of accurate but simple empirical force fields for water. However, the complexity of these systems evidences the difficulties in describing solution properties…

软凝聚态物质 · 物理学 2025-08-07 Łukasz Baran , Cosmin A. Dicu-Gohoreanu , Luis G. MacDowell

Diffusion of particles in complex fluids and gels is difficult to describe and often lies beyond the scope of the classical Stokes-Einstein relation. One of the main lines of research over the past few decades has sought to relate…

软凝聚态物质 · 物理学 2025-12-25 Władysław Sokołowski , Huma Jamil , Karol Makuch

Translational diffusion coefficients are routinely estimated from molecular dynamics simulations. Linear fits to mean squared displacement (MSD) curves have become the de facto standard, from simple liquids to complex biomacromolecules.…

计算物理 · 物理学 2020-11-20 Jakob Tómas Bullerjahn , Sören von Bülow , Gerhard Hummer

The problem of diffusion in a porous medium with a spatially varying porosity is considered. The particular microstructure analyzed comprises a collection of impenetrable spheres, though the methods developed are general. Two different…

流体动力学 · 物理学 2017-10-12 Maria Bruna , S. Jonathan Chapman

Specifically, we examine concentrations from [NaCl]=1m to [NaCl]=6m, where 6.1m represents the solubility threshold of NaCl in H2O. For the water model, we employ the flexible TIP4P/$\epsilon_{Flex}$ model, which offers an enhanced…

统计力学 · 物理学 2024-10-25 Raúl Fuentes-Azcatl

In this paper we revisit the issue of the propagation of warps in thin and viscous accretion discs. In this regime warps are know to propagate diffusively, with a diffusion coefficient approximately inversely proportional to the disc…

高能天体物理现象 · 物理学 2015-05-18 G. Lodato , D. Price

The diffusion of atoms and radicals on interstellar dust grains is a fundamental ingredient for predicting accurate molecular abundances in astronomical environments. Quantitative values of diffusivity and diffusion barriers usually rely…

星系天体物理 · 物理学 2021-12-22 Viktor Zaverkin , Germán Molpeceres , Johannes Kästner

Transport coefficients, such as the diffusion coefficient and shear viscosity, are important material properties that are calculated in computer simulations. In this study, the criterion for the best estimation of viscosity, as an example…

计算物理 · 物理学 2023-06-05 Xin Liu , Xuhong Guo , Qi Liao

Self- and binary Maxwell-Stefan diffusion coefficients were determined by equilibrium molecular dynamics simulations with the Green-Kubo method. This study covers self-diffusion coefficients at liquid states for eight pure fluids, i.e.…

化学物理 · 物理学 2009-04-30 Gimmy Alex Fernandez Ramirez , Jadran Vrabec , Hans Hasse

The experimental literature on the motion of mesoscopic probe particles through polymer solutions is systematically reviewed. The primary focus is the study of diffusive motion of small probe particles. Comparison is made with measurements…

软凝聚态物质 · 物理学 2007-05-23 George D. J. Phillies