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The bacterium {\em Bacilus subtilis} frequently forms biofilms at the interface between the culture medium and the air. We develop a mathematical model that couples a description of bacteria as individual discrete objects to the standard…

细胞行为 · 定量生物学 2015-12-16 Maxime Ardré , Hervé Henry , Carine Douarche , Mathis Plapp

Discrete simulation methods are efficient tools to investigate the complex behaviors of complex fluids made of either dry granular materials or dilute suspensions. By contrast, materials made of soft and/or concentrated units (emulsions,…

流体动力学 · 物理学 2008-12-18 Pierre Rognon , Cyprien Gay

Dense suspensions of swimming bacteria are known to exhibit collective behaviour arising from the interplay of steric and hydrodynamic interactions. Unconfined suspensions exhibit transient, recurring vortices and jets, whereas those…

生物物理 · 物理学 2016-07-04 Hugo Wioland , Enkeleida Lushi , Raymond E. Goldstein

Active suspensions encompass a wide range of complex fluids containing microscale energy-injecting particles, such as cells, bacteria or artificially powered active colloids. Because they are intrinsically non-equilibrium, active…

软凝聚态物质 · 物理学 2024-07-09 Zhouyang Ge , Gwynn J. Elfring

A new computational method is presented to resolve hydrodynamic interactions acting on solid particles immersed in incompressible host fluids. In this method, boundaries between solid particles and host fluids are replaced with a continuous…

软凝聚态物质 · 物理学 2009-11-10 Y. Nakayama , R. Yamamoto

The run-and-tumble (RT) dynamics followed by bacterial swimmers gives rise first to a ballistic motion due to their persistence, and later, through consecutive tumbles, to a diffusive process. Here we investigate how long it takes for a…

软凝聚态物质 · 物理学 2020-07-01 Andrea Villa-Torrealba , Cristóbal Chávez Raby , Pablo de Castro , Rodrigo Soto

We study experimentally and theoretically the hydrodynamic interaction of pairs of circular inclusions in two-dimensional, fluid smectic membranes suspended in air. By analyzing their Brownian motion, we find that the radial mutual…

We numerically study the dynamics of run-and-tumble particles confined in two chambers connected by thin channels. Two dominant dynamical behaviors emerge: (i) an oscillatory pumping state, in which particles periodically fill the two…

软凝聚态物质 · 物理学 2015-11-04 M. Paoluzzi , R. Di Leonardo , L. Angelani

We study colonies of non-motile, rod-shaped bacteria growing on solid substrates. In our model, bacteria interact purely mechanically, by pushing each other away as they grow, and consume a diffusing nutrient. We show that mechanical…

生物物理 · 物理学 2015-06-15 F. D. C. Farrell , O. Hallatschek , D. Marenduzzo , B. Waclaw

Active turbulence is a paradigmatic and fascinating example of self-organized motion at large scales occurring in active matter. We employ massive hydrodynamic simulations of suspensions of resolved model microswimmers to tackle the…

软凝聚态物质 · 物理学 2025-03-18 Antonio Gascó , Ignacio Pagonabarraga , Andrea Scagliarini

Many suspensions contain particles with complex shapes that are affected not only by hydrodynamics, but also by thermal fluctuations, internal kinematic constraints and other long-range non-hydrodynamic interactions. Modeling these systems…

软凝聚态物质 · 物理学 2025-07-31 Blaise Delmotte , Florencio Balboa Usabiaga

Anisotropic macromolecules exposed to non-equilibrium (active) noise are very common in biological systems, and an accurate understanding of their anisotropic dynamics is therefore crucial. Here, we experimentally investigate the dynamics…

软凝聚态物质 · 物理学 2020-07-08 Mehdi Shafiei Aporvari , Mustafa Utkur , Emine Ulku Saritas , Giovanni Volpe , Joakim Stenhammar

Series of experiments on turbulent bubbly channel flows observed bubble clusters near the wall which can change large-scale flow structures. To gain insights into clustering mechanisms, we study the interaction of a pair of spherical…

流体动力学 · 物理学 2022-02-07 Kazuki Maeda , Masanobu Date , Kazuyasu Sugiyama , Shu Takagi , Yoichiro Matsumoto

Surface effects are generally prevailing in confined colloidal systems. Here we report on dispersed nanoparticles close to a fluid membrane. Exact results regarding the static organization are derived for a dilute solution of non-adhesive…

统计力学 · 物理学 2009-11-10 Thomas Bickel , Mabrouk Benhamou , Hamid Kaidi

In this paper we present a hydrodynamic approach to describe the motion of migrating bacteria as a special class of self-propelled systems. Analytical and numerical calculations has been performed to study the behavior of our model in the…

软凝聚态物质 · 物理学 2015-06-25 Zoltan Csahok , Andras Czirok

Dynamical polydispersity in single-particle properties, for example a fluctuating particle size, shape, charge density, etc., is intrinsic to responsive colloids (RCs), such as biomacromolecules or microgels, but is typically not resolved…

软凝聚态物质 · 物理学 2021-05-26 Upayan Baul , Joachim Dzubiella

This paper explores how competing interactions in the intermolecular potential of fluids affect their structural transitions. This study employs a versatile potential model with a hard core followed by two constant steps, representing wells…

软凝聚态物质 · 物理学 2025-01-22 Ana M. Montero , Santos B. Yuste , Andrés Santos , Mariano López de Haro

Within the framework of a discrete Gaussian model, we present analytical results for the interaction induced by a lamellar phase between small embedded colloids. We consider the two limits of particles strongly adherent to the adjacent…

The induced diffusion of tracers in a bacterial suspension is studied theoretically and experimentally at low bacterial concentrations. Considering the swimmer-tracer hydrodynamic interactions at low-Reynolds number and using a kinetic…

软凝聚态物质 · 物理学 2015-06-11 G. L. Miño , J. Dunstan , A. Rousselet , E. Clement , R. Soto

We have implemented vibronic dynamics for simulations of the third order coherent response of electronic dimers. In the present communication we provide the full and detailed description of the dynamical model, recently used for simulations…

化学物理 · 物理学 2017-08-31 Václav Perlík , František Šanda