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We develop an analytical theory that accounts for the image and surface charge interactions between a charged dielectric membrane and a DNA molecule translocating through the membrane. Translocation events through neutral carbon-based…

软凝聚态物质 · 物理学 2016-08-03 Sahin Buyukdagli , T. Ala-Nissila

Under the most common experimental conditions, the adsorption of proteins to solid surfaces is an spontaneous process that leads to a rather compact layer of randomly oriented molecules. Due to the importance of this process for the…

软凝聚态物质 · 物理学 2022-06-29 Sergio A. Urzúa , Perla Y. Sauceda-Oloño , Carlos D. García , Christopher D. Cooper

We consider the influence of electrostatic forces on driven translocation dynamics of a flexible polyelectrolyte being pulled through a nanopore by an external force on the head monomer. To this end, we augment the iso-flux tension…

软凝聚态物质 · 物理学 2020-07-07 Jalal Sarabadani , Sahin Buyukdagli , Tapio Ala-Nissila

Proton transfer is central to many processes of chemical interest. The simulation of proton transfer dynamics requires the inclusion of nuclear quantum effects, such as zero-point energy, nuclear delocalization, and tunneling. Herein, we…

化学物理 · 物理学 2026-03-19 Joseph A. Dickinson , Mathew Chow , Eno Paenurk , Sharon Hammes-Schiffer

Excited state hydrogen transfer (ESHT) is responsible to various photochemical processes of aromatics including photoprotection of nuclear basis. Its mechanism is explained by the internal conversion from aromatic $\pi$$\pi$* to…

原子与分子团簇 · 物理学 2017-12-06 Mitsuhiko Miyazaki , Ryuhei Ohara , Claude Dedonder , Christophe Jouvet , Masaaki Fujii

A model study of propidium iodide delivery with millisecond electric pulses is presented; this work is a companion of the experimental efforts by Sadik et al. [1]. Both membrane permeabilization and delivery are examined with respect to six…

生物物理 · 物理学 2014-01-28 Miao Yu , Hao Lin

We discuss the electronic transport through molecules in the Kondo regime. We concentrate here on the influence of molecular vibrations. Two types of vibrations are investigated: (i) the breathing internal molecular modes, where the…

介观与纳米尺度物理 · 物理学 2009-12-21 J. Mravlje , A. Ramsak

Room-temperature Coulomb blockade of charge transport through composite nanostructures containing organic inter-links has recently been observed. A pronounced charging effect in combination with the softness of the molecular links implies…

凝聚态物理 · 物理学 2009-10-30 L. Y. Gorelik , A. Isacsson , M. V. Voinova , B. Kasemo , R. I. Shekhter , M. Jonson

The relaxation dynamics of correlated electron transport (ET) along molecular chains is studied based on a substantially improved numerically exact path integral Monte Carlo (PIMC) approach. As archetypical model we consider a Hubbard chain…

统计力学 · 物理学 2009-11-11 L. Muehlbacher , J. Ankerhold , A. Komnik

We present a model of electron transport through a random distribution of interacting quantum dots embedded in a dielectric matrix to simulate realistic devices. The method underlying the model depends only on fundamental parameters of the…

介观与纳米尺度物理 · 物理学 2012-07-25 S. Illera , J. D. Prades , A. Cirera , A. Cornet

The interaction of an electron with a local static charge distribution (e.g., an atom or molecule) is dominated at large distances by the radial 1/r Coulomb potential. The second order effect comes from the non-central electric dipole…

量子物理 · 物理学 2023-02-08 A. D. Alhaidari , H. Bahlouli

Transport of liquid mixtures through porous membranes is central to processes such as desalination, chemical separations and energy harvesting, with ultrathin membranes made from novel 2D nanomaterials showing exceptional promise. Here we…

软凝聚态物质 · 物理学 2019-08-06 Daniel J. Rankin , Lydéric Bocquet , David M. Huang

A molecular dynamics (MD) simulation is used to quantitatively analyze the induced membrane potential for an applied external field varied between 0.4 V/nm to 2.0 V/nm. The change in the electrostatic potential in the DPPC is directly…

生物物理 · 物理学 2023-11-02 Shadeeb Hossain

A new model for the interaction of an electric pulse with a lipid membrane is proposed. Using this model we show that when a DC electric pulse is applied to an insulating lipid membrane separating fluids with different conductivities, the…

生物物理 · 物理学 2015-05-18 Jonathan T. Schwalbe , Petia M. Vlahovska , Michael J. Miksis

It is well known that lipid membranes respond to a threshold transmembrane electric field through a reversible mechanism called electroporation, where hydrophilic water pores form across the membrane, an effect widely used in biological…

软凝聚态物质 · 物理学 2023-04-17 Di Jin , Yu Zhang , Jacob Klein

The interaction between molecular (atomic) electron(s) and the vacuum field of a reflective cavity generates a significant interest thanks to the rapid developments in nanophotonics. Such interaction which lies within the realm of cavity…

化学物理 · 物理学 2019-05-22 Alexander Semenov , Abraham Nitzan

We developed the theory of elastic electron tunneling through a potential barrier driven by a strong high-frequency electromagnetic field. It is demonstrated that the driven barrier can be considered as a stationary two-barrier potential…

介观与纳米尺度物理 · 物理学 2023-11-13 M. V. Boev , V. M. Kovalev , O. V. Kibis

A model is developed for describing the transport of charged colloidal particles in an evaporating sessile droplet on the electrified metal substrate in the presence of a solvent flow. The model takes into account the electric charge of…

软凝聚态物质 · 物理学 2022-03-16 Semen V. Zavarzin , Andrei L. Kolesnikov , Yury A. Budkov , Lev Yu. Barash

We reformulate and extend porous electrode theory for non-ideal active materials, including those capable of phase transformations. Using principles of non-equilibrium thermodynamics, we relate the cell voltage, ionic fluxes, and Faradaic…

化学物理 · 物理学 2012-08-24 Todd R. Ferguson , Martin Z. Bazant

We develop a detailed theoretical model of photo-induced proton-coupled electron transfer (PPCET) processes, which are at the basis of solar energy harvesting in biological systems and photovoltaic materials. Our model enables to analyze…

化学物理 · 物理学 2021-04-13 Jiaji Zhang , Raffaele Borrelli , Yoshitaka Tanimura