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We use a coarse-grained model of DNA-functionalized particles to understand the role of DNA chain length on their self-assembly. We find that the increasing chain length for a given particle size decreases the propensity to form ordered…

软凝聚态物质 · 物理学 2020-01-07 Runfang Mao , Jeetain Mittal

The properties and applications of metallic nanoparticles are inseparably connected not only to their detailed morphology and composition, but also to their structural configuration and mutual interactions. As a result, the assemblies often…

Emergent phenomena share the fascinating property of not being obvious consequences of the design of the system in which they appear. This characteristic is no less relevant when attempting to simulate such phenomena, given that the outcome…

软凝聚态物质 · 物理学 2014-11-26 D. C. Rapaport

Self-assembly of nanoparticles at fluid-fluid interfaces is a promising route to fabricate functional materials from the bottom-up. However, directing and controlling particles into highly tunable and predictable structures -- while…

软凝聚态物质 · 物理学 2019-09-25 Qingguang Xie , Gary B. Davies , Jens Harting

The kinetics of the self-assembly of nanocomponents into a virus, nanocapsule, or other composite structure is analyzed via a multiscale approach. The objective is to achieve predictability and to preserve key atomic-scale features that…

化学物理 · 物理学 2015-05-18 Stephen Pankavich , Zeina Shreif , Yinglong Miao , Peter Ortoleva

We propose a semiparametric model for autonomous nonlinear dynamical systems and devise an estimation procedure for model fitting. This model incorporates subject-specific effects and can be viewed as a nonlinear semiparametric mixed…

应用统计 · 统计学 2011-12-01 Debashis Paul , Jie Peng , Prabir Burman

Intricate biomineralization processes in molluscs engineer hierarchical structures with meso-, nano-, and atomic architectures that give the final composite material exceptional mechanical strength and optical iridescence on the macroscale.…

The emergence of order from initial disordered movement in self-propelled collective motion is an instance of nonequilibrium phase transition, which is known to be first order in the thermodynamic limit. Here, we introduce a multiplicative…

统计力学 · 物理学 2024-04-30 Fatemeh Haghsheno , Mohammad Mehrafarin

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

计算复杂性 · 计算机科学 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

This work presents a microscale approach for simulating the dielectrophoresis (DEP) assembly of polarizable particles under an external electric field. The model is shown to capture interesting dynamical and topological features, such as…

Particle systems are physical systems of simple computational particles that can bond to neighboring particles and use these bonds to move from one spot to another (non-occupied) spot. These particle systems are supposed to be able to…

分布式、并行与集群计算 · 计算机科学 2013-07-17 Shlomi Dolev , Robert Gmyr , Andrea W. Richa , Christian Scheideler

We consider an aggregation model that consists of an active transport equation for the macroscopic population density, where the velocity has a nonlocal functional dependence on the density, modelled via an interaction potential. We set up…

适应与自组织系统 · 物理学 2019-09-25 Razvan C. Fetecau , Beril Zhang

The combination of soft responsive particles, such as microgels, with nanoparticles (NPs) yields highly versatile complexes of great potential for applications, from ad-hoc plasmonic sensors to controlled protocols for loading and release.…

We employ cell dynamics simulation based on the CH/BD model to investigate the self-assembly behavior of a mixed system consisting of diblock copolymers (AB), homopolymers (C), and Janus nanorods. The results indicate that, at different…

软凝聚态物质 · 物理学 2025-09-24 Y. Q. Guo , J. Liu , H. R. He , N. Wu , J. J. Zhang

New model equations are derived for dynamics of self-aggregation of finite-size particles. Differences from standard Debye-Huckel and Keller-Segel models are: the mobility of particles depends on the configuration of their neighbors and…

斑图形成与孤子 · 物理学 2009-11-11 Darryl D. Holm , Vakhtang Putkaradze

DNA nanoparticles with three-fold coordination have been observed to self-assemble in experiment into a network equivalent to the hexagonal (6.6.6) tiling, and a network equivalent to the 4.8.8 Archimedean tiling. Both networks are built…

统计力学 · 物理学 2018-05-28 Zdenek Preisler , Barbara Sacca , Stephen Whitelam

Tracking experiments in dense biological tissues reveal a diversity of sources f or local energy injection at the cell scale. The effect of cell motility has been largely studied, but much less is known abo ut the effect of the observed…

软凝聚态物质 · 物理学 2017-11-29 Elsen Tjhung , Ludovic Berthier

Different phoretic driving mechanisms have been proposed for the transport of solid or liquid microscopic inclusions in integrated chemical processes. However, the ability to reversibly address both the flow path, rate, and local reactant…

软凝聚态物质 · 物理学 2014-06-24 Sergi Hernàndez-Navarro , Pietro Tierno , Jordi Ignés-Mullol , Francesc Sagués

We use computer simulations to study a model, first proposed by Wales [1], for the reversible and monodisperse self-assembly of simple icosahedral virus capsid structures. The success and efficiency of assembly as a function of…

生物大分子 · 定量生物学 2010-02-24 Iain G. Johnston , Ard A. Louis , Jonathan P. K. Doye

By means of multicanonical computer simulations, we investigate thermodynamic properties of the aggregation of interacting semiflexible polymers. We analyze a mesoscopic bead-stick model, where nonbonded monomers interact via Lennard-Jones…

软凝聚态物质 · 物理学 2015-05-28 Christoph Junghans , Michael Bachmann , Wolfhard Janke
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