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The non-equilibrium structural and dynamical properties of semiflexible polymers confined to two dimensions are investigated by molecular dynamics simulations. Three different scenarios are considered: The force-extension relation of…

软凝聚态物质 · 物理学 2013-01-08 A. Lamura , R. G. Winkler

Shells, when confined, can deform in a broad assortment of shapes and patterns, often quite dissimilar to what is produced by their flat counterparts (plates). In this work we discuss the morphological landscape of shells deposited on a…

软凝聚态物质 · 物理学 2018-06-12 Octavio Albarrán , Desislava V. Todorova , Eleni Katifori , Lucas Goehring

We use Brownian dynamics simulations and theory to study the over-damped spatiotemporal dynamics and pattern formation in a fluid-permeated array of equally spaced, active, elastic filaments that are pinned at one end and free at the other.…

软凝聚态物质 · 物理学 2024-12-31 Sonu Karayat , Prashant K. Purohit , L. Mahadevan , Arvind Gopinath , Raghunath Chelakkot

Narrow membrane tubes are commonly pulled out from the surface of phospholipid vesicles using forces applied either through laser or magnetic tweezers or through the action of processive motor proteins. Recent examples have emerged where…

生物物理 · 物理学 2019-02-27 Gaurav Kumar , N. Ramakrishnan , Anirban Sain

Cells sense the geometry and stiffness of their adhesive environment by active contractility. For strong adhesion to flat substrates, two-dimensional contractile network models can be used to understand how force is distributed throughout…

细胞行为 · 定量生物学 2015-06-03 P. Guthardt Torres , I. B. Bischofs , U. S. Schwarz

The occurrence of coiled or helical morphologies is common in nature, from plant roots to DNA packaging into viral capsids, as well as in applications such as oil drilling processes. In many examples, chiral structures result from the…

RNA folding is a kinetic process governed by the competition of a large number of structures stabilized by the transient formation of base pairs that may induce complex folding pathways and the formation of misfolded structures. Despite of…

生物物理 · 物理学 2009-03-16 M. Manosas , I. Junier , F. Ritort

We study the dynamic structure factor of fluctuating elastic thin sheets subject to conservative (athermal) random forcing. In Steinbock, Katzav & Boudaoud, Phys. Rev. Research 4, 033096 (2022), the static structure factor of such a sheet…

软凝聚态物质 · 物理学 2023-02-09 Chanania Steinbock , Eytan Katzav

The transfer of mechanical signals through cells is a complex phenomenon. To uncover a new mechanotransduction pathway, we study the frequency-dependent transport of mechanical stimuli by single microtubules and small networks in a…

生物物理 · 物理学 2017-05-03 M. D. Koch , N. Schneider , P. Nick , A. Rohrbach

We investigate how randomly oriented cell traction forces lead to fluidisation in a vertex model of epithelial tissues. We find that the fluidisation occurs at a critical value of the traction force magnitude $F_c$. We show that this…

软凝聚态物质 · 物理学 2022-11-07 Aboutaleb Amiri , Charlie Duclut , Frank Jülicher , Marko Popović

In this letter, the possible dynamic scaling properties of protein molecules in folding are investigated theoretically by assuming that the protein molecules are percolated networks. It is shown that the fractal character and the fractal…

凝聚态物理 · 物理学 2007-05-23 Liang-Jian Zou , X. G. Gong , Zheng-Gang Zhu

We study the conformation and dynamics of a single polymer chain that is pulled by a constant force applied at its one end with the other end free. Such a situation is relevant to the growing technology of manipulating individual…

软凝聚态物质 · 物理学 2015-06-04 Takahiro Sakaue , Takuya Saito , Hirofumi Wada

The role of thermal fluctuations on the conformational dynamics of a single closed filament is studied. It is shown that, due to the interaction between charges and bending degrees of freedom, initially circular aggregates may undergo…

其他凝聚态物理 · 物理学 2009-11-13 Yu. B. Gaididei , C. Gorria , P. L. Christiansen , M. P. Soerensen

We study the electric properties of single-stranded DNA molecules with hairpin-like shapes in the presence of a magnetic flux. It is shown that the current amplitude can be modulated by the applied field. The details of the electric…

介观与纳米尺度物理 · 物理学 2007-05-23 Juyeon Yi , Henri Orland

The preference of thin flat sheets to bend rather than stretch, combined with results from Geometry, mean that changes in a thin sheet's Gaussian curvature are prohibitively expensive. As a result, an imposed curvature in one principal…

软凝聚态物质 · 物理学 2019-08-19 Matteo Taffetani , Finn Box , Arthur Neveu , Dominic Vella

DNA bending on length scales shorter than a persistence length plays an integral role in the translation of genetic information from DNA to cellular function. Quantitative experimental studies of these biological systems have led to a…

软凝聚态物质 · 物理学 2009-11-11 Paul A. Wiggins , Philip C. Nelson

Continuum elasticity is a powerful tool applicable in a broad range of physical systems and phenomena. Yet, understanding how and on what scales material disorder may lead to the breakdown of continuum elasticity is not fully understood. We…

软凝聚态物质 · 物理学 2023-04-11 Edan Lerner , Eran Bouchbinder

We study contact line induced instabilities for a thin film of fluid under destabilizing gravitational force in three dimensional setting. In the previous work (Phys. Fluids, {\bf 22}, 052105 (2010)), we considered two dimensional flow,…

流体动力学 · 物理学 2015-03-19 T. -S. Lin , L. Kondic , A. Filippov

The detachment dynamics of a fluid membrane with an isotropic spontaneous curvature from a flat substrate are studied by using meshless membrane simulations. The membrane is detached from an open edge leading to vesicle formation. With…

软凝聚态物质 · 物理学 2019-11-11 Hiroshi Noguchi

We use virial series to study the equilibrium properties of confined soft-spheres fluids interacting through the inverse-power potentials. The confinement is induced by hard walls with planar, spherical and cylindrical shapes. We evaluate…

软凝聚态物质 · 物理学 2016-09-28 Ignacio Urrutia