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Understanding the complex self-assembly of biomacromolecules is a major outstanding question. Microtubules are one example of a biopolymer that possesses characteristics quite distinct from standard synthetic polymers that are derived from…

软凝聚态物质 · 物理学 2013-01-10 Shengfeng Cheng , Ankush Aggarwal , Mark J. Stevens

We investigate the mechanical origin of polymorphic structures in two-dimensional tubulin assemblies, of which microtubules are the best known example. These structures feature twisted ribbons, flat tubulin sheets, macrotubules, and hoops,…

软凝聚态物质 · 物理学 2022-09-27 Ireth García-Aguilar , Steven Zwaan , Luca Giomi

We introduce and parameterize a chemomechanical model of microtubule dynamics on the dimer level, which is based on the allosteric tubulin model and includes attachment, detachment and hydrolysis of tubulin dimers as well as stretching of…

亚细胞过程 · 定量生物学 2021-08-31 Matthias Schmidt , Jan Kierfeld

Membrane tubulation is a ubiquitous process that occurs both at the plasma membrane and on the membranes of intracellular organelles. These tubulation events are known to be mediated by forces applied on the membrane either due to motor…

软凝聚态物质 · 物理学 2020-12-03 Arijit Mahapatra , Can Uysalel , Padmini Rangamani

Microtubules have been in biophysical focus for several decades. Yet the confusing and mutually contradicting results regarding their elasticity and fluctuations have shed some doubts on their present understanding. In this paper we expose…

软凝聚态物质 · 物理学 2011-11-22 Hervé Mohrbach , Albert Johner , Igor M. Kulić

The efficient and controlled assembly of complex structures from macromolecular building blocks is a critical open question in both biological systems and nanoscience. Using molecular dynamics simulations we study the self-assembly of…

软凝聚态物质 · 物理学 2014-06-10 Shengfeng Cheng , Mark J. Stevens

Microtubules, major elements of the cell skeleton are, most of the time, well organized in vivo, but they can also show self-organizing behaviors in time and/or space in purified solutions in vitro. Theoretical studies and models based on…

生物物理 · 物理学 2012-09-03 Nicolas Glade

We present a thermal activated solvent bonding technique for the formation of embedded microstrucutres in polymer. It is based on the temperature dependent solubility of polymer in a liquid that is not a solvent at room temperature. With…

其他计算机科学 · 计算机科学 2008-02-22 S. H. Ng , R. T. Tjeung , Z. F. Wang , A. C. W. Lu , I. Rodriguez , N. De Rooij

The microtubule is a cylindrical biological polymer that plays key roles in cellular structure, transport, and signalling. In this work, based on studies of electronic properties of polyacetelene and mechanical properties of microtubules…

介观与纳米尺度物理 · 物理学 2023-08-22 Varsha Subramanyan , Kay L. Kirkpatrick , Saraswathi Vishveshwara , Smitha Vishveshwara

We study a one-dimensional model of microtubule assembly/disassembly in which GTP bound to tubulins within the microtubule undergoes stochastic hydrolysis. In contrast to models that only consider a cap of GTP-bound tubulin, stochastic…

生物大分子 · 定量生物学 2015-05-13 Sumedha , Michael F Hagan , Bulbul Chakraborty

In this work we present the general phase behavior of short tubelike flexible polymers. The geometric thickness constraint is implemented through the concept of the global radius of curvature. We use sophisticated Monte Carlo sampling…

软凝聚态物质 · 物理学 2009-07-20 Thomas Vogel , Thomas Neuhaus , Michael Bachmann , Wolfhard Janke

We demonstrate that the active thermocapillary stresses induced by multiple microbubbles offer simple routes to directed self-assembly and complex but controllable micromanipulation of mesoscopic colloidal particles embedded in a liquid.…

流体动力学 · 物理学 2019-03-26 Subhrokoli Ghosh , Aritra Biswas , Basudev Roy , Ayan Banerjee

Microtubules, the primary components of the chromosome segregation machinery, are stabilized by longitudinal and lateral non-covalent bonds between the tubulin subunits. However, the thermodynamics of these bonds and the microtubule…

It was once purported that biological systems were far too warm and wet to support quantum phenomena mainly due to thermal effects disrupting quantum coherence. However recent experimental results and theoretical analyses have shown that…

The process of formation for an ice crystal with elaborate, symmetrical patterns from the water vapor is usually complicated and the corresponding mechanism is still not clear. Here, we experimentally constructed the 3D tubular ice crystals…

应用物理 · 物理学 2020-11-03 Xiaolu Zhu , Zheng Wang

Polymer blends consisting of two or more polymers are important for a wide variety of industries and processes, but, the precise mechanism of their thermomechanical behaviour is incompletely understood. In order to understand clearly, it is…

软凝聚态物质 · 物理学 2021-01-12 Pashupati Pokharel , Feng Wei , Jianyi Shi , Yingmin Wang , Dequan Xiao

An aster of microtubules is a set of flexible polar filaments with dynamic plus-ends, which irradiate from a common location at which the minus ends of the filaments are found. Processive soluble oligomeric motor complexes can bind…

软凝聚态物质 · 物理学 2007-05-23 Francois Nedelec

At low temperatures, colloidal particles with short-range attractive and long-range repulsive interactions can form various periodic microphases in bulk.In this paper, we investigate the self-assembly behaviour of colloids with competing…

软凝聚态物质 · 物理学 2023-12-12 Ningyi Li , Junhong Li , Lijingting Qing , Shicheng Ma , Yao Li , Baohui Li

Starting from the hypothesis that the tubulin dimer is a conformationally bistable molecule - fluctuating between a curved and a straight configuration at room temperature - we develop a model for polymorphic dynamics of the microtubule…

生物大分子 · 定量生物学 2010-05-10 Herve Mohrbach , Albert Johner , Igor M. Kulic

The self-assembly of proteins into $\beta$-sheet-rich amyloid fibrils has been observed to occur with sigmoidal kinetics, indicating that the system initially is trapped in a metastable state. Here, we use a minimal lattice-based model to…

生物物理 · 物理学 2016-01-05 Anders Irbäck , Jonas Wessén
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