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We present a simple coarse-grained bead-and-spring model for lipid bilayers. The system has been developed to reproduce the main (gel-liquid) transition of biological membranes on intermediate length scales of a couple of nanometres and is…

软凝聚态物质 · 物理学 2007-05-23 Olaf Lenz , Friederike Schmid

Cellular membranes are elastic lipid bilayers that contain a variety of proteins, including ion channels, receptors, and scaffolding proteins. These proteins are known to diffuse in the plane of the membrane and to influence the bending of…

软凝聚态物质 · 物理学 2020-10-28 Arijit Mahapatra , David Saintillan , Padmini Rangamani

The layers of graphene oxide (GO) are found to be good for permeation of water but not for helium (Science 2012 335 (6067): 442-444) suggesting that the GO layers are dynamic in the formation of permeation route depending on the environment…

介观与纳米尺度物理 · 物理学 2015-10-01 Nallani Raghav , Sudip Chakraborty , Prabal K. Maiti

Health concerns associated with the advent of nanotechnologies have risen sharply when it was found that particles of nanoscopic dimensions reach the cell lumina. Plasma and organelle lipid membranes, which are exposed to both the incoming…

Purpose. This study investigates in silico the contribution of the hair follicle to the overall dermal permeability of small molecules, as published experimental work provides inconclusive information on whether the follicular route favours…

组织与器官 · 定量生物学 2024-02-06 Daniel Sebastia-Saez , Guoping Lian , Tao Chen

Using molecular dynamics simulations, we investigate the relation between the dynamic transitions of biomolecules (lysozyme and DNA) and the dynamic and thermodynamic properties of hydration water. We find that the dynamic transition of the…

软凝聚态物质 · 物理学 2009-11-11 P. Kumar , Z. Yan , L. Xu , M. G. Mazza , S. V. Buldyrev , S. -H. Chen , S. Sastry , H. E. Stanley

We found theoretically that competition between ~Kq^4 and ~Qq^2 terms in the Fourier transformed conformational energy of a single lipid chain, in combination with inter-chain entropic repulsion in the hydrophobic part of the lipid…

定量方法 · 定量生物学 2009-11-13 I. N. Krivonos , S. I. Mukhin

A mesoscopic coarse-grain model for computationally-efficient simulations of biomembranes is presented. It combines molecular dynamics simulations for the lipids, modeled as elastic chains of beads, with multiparticle collision dynamics for…

软凝聚态物质 · 物理学 2015-06-04 Mu-Jie Huang , Raymond Kapral , Alexander S. Mikhailov , Hsuan-Yi Chen

We present a stochastic phase-field model for multicomponent lipid bilayers that explicitly accounts for the quasi-two-dimensional hydrodynamic environment unique to a thin fluid membrane immersed in aqueous solution. Dynamics over a wide…

软凝聚态物质 · 物理学 2011-05-26 Brian A. Camley , Frank L. H. Brown

Native membranes of biological cells display melting transitions of their lipids at a temperature of 10-20 degrees below body temperature. Such transitions can be observed in various bacterial cells, in nerves, in cancer cells, but also in…

生物物理 · 物理学 2020-08-10 Thomas Heimburg

We study membrane-protein interactions and membrane-mediated protein-protein interactions by Monte Carlo simulations of a generic coarse-grained model for lipid bilayers with cylindrical hydrophobic inclusions. The strength of the…

生物物理 · 物理学 2009-11-13 Beate West , Frank L. H. Brown , Friederike Schmid

In the mimetic membrane system of phosphatidylcholine bilayers, thickening (pre-critical behavior, anomalous swelling) of the bilayers is observed, in the vicinity of the main transition, which is non-linear with temperature. The sterols…

软凝聚态物质 · 物理学 2009-10-31 F. Richter , L. Finegold , G. Rapp

Lipid membranes form the barrier between the inside and outside of cells and many of their subcompartments. As such, they bind to a wide variety of nano- and micrometer sized objects and, in the presence of strong adhesive forces, strongly…

软凝聚态物质 · 物理学 2021-08-31 Hendrik T. Spanke , Jaime Agudo-Canalejo , Daniel Tran , Robert W. Style , Eric R. Dufresne

We investigate the properties of membranes under tension by Monte-Carlo simulations of a generic coarse-grained model for lipid bilayers. We give a comprising overview of the behavior of several membrane characteristics, such as the area…

生物物理 · 物理学 2010-03-17 Jörg Neder , Beate West , Peter Nielaba , Friederike Schmid

A fiber withdrawn from a bath of a dilute particulate suspension exhibits different coating regimes depending on the physical properties of the fluid, the withdrawal speed, the particle sizes, and the radius of the fiber. Our experiments…

流体动力学 · 物理学 2020-06-30 B. M. Dincau , E. Mai , Q. Magdelaine , J. A. Lee , M. Z. Bazant , A. Sauret

We use a long, all-atom molecular dynamics (MD) simulation combined with theoretical modeling to investigate the dynamics of selected lipid atoms and lipid molecules in a hydrated diyristoyl-phosphatidylcholine (DMPC) lipid bilayer. From…

生物物理 · 物理学 2009-11-13 Elijah Flenner , Jhuma Das , Maikel C. Rheinstadter , Ioan Kosztin

This paper presents a model and numerical analysis (simulations) of transmembrane potential induced in biological cell membrane under the influence of externally applied electric field (i.e., electroporation). This model differs from the…

生物物理 · 物理学 2009-11-13 Pratip Shil , Salil Bidaye , Pandit B. Vidyasagar

People use various products containing chemical substances that can diffuse through the human skin barrier and reach deeper layers. Therefore, it is essential to understand the transport mechanisms of these chemicals. We developed…

数值分析 · 数学 2025-08-12 Milana Tesfamarian , Arne Nägel , Michael Heisig , Gabriel Wittum

Bilayer lipid membranes [BLMs] are an essential component of all biological systems, forming a functional barrier for cells and organelles from the surrounding environment. The lipid molecules that form membranes contain both permanent and…

生物物理 · 物理学 2015-03-17 Richard J. Bingham , Peter D. Olmsted , Stephen W. Smye

The bi-layered structure has drawn a wide interest due to its good performance in solar steam generation. In this work, we firstly develop a calculation model which could give a good prediction of experimental results. Then, this model is…

应用物理 · 物理学 2018-06-19 Jinxin Zhong , Congliang Huang , Dongxu Wu