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Autocatalysis is a deceptively simple concept, referring to the situation that a chemical species $X$ catalyzes its own formation. From the perspective of chemical kinetics, autocatalysts show a regime of super-linear growth. Given a…

分子网络 · 定量生物学 2021-07-08 Jakob L. Andersen , Christoph Flamm , Daniel Merkle , Peter F. Stadler

Recent advances in generative AI have accelerated the discovery of novel chemicals and materials. However, scaling these discoveries to industrial production remains a major bottleneck due to the synthesis gap -- the need to develop…

机器学习 · 计算机科学 2025-08-19 Sakhinana Sagar Srinivas , Shivam Gupta , Venkataramana Runkana

Probabilistic Circuits (PCs) have emerged as an efficient framework for representing and learning complex probability distributions. Nevertheless, the existing body of research on PCs predominantly concentrates on data-driven parameter…

机器学习 · 计算机科学 2024-12-20 Athresh Karanam , Saurabh Mathur , Sahil Sidheekh , Sriraam Natarajan

This paper introduces a collaborative, human-centred taxonomy of AI, algorithmic and automation harms. We argue that existing taxonomies, while valuable, can be narrow, unclear, typically cater to practitioners and government, and often…

Developing robust representations of chemical structures that enable models to learn topological inductive biases is challenging. In this manuscript, we present a representation of atomistic systems. We begin by proving that our…

机器学习 · 计算机科学 2024-09-27 Rahul Khorana , Marcus Noack , Jin Qian

Information theory is concerned with the study of transmission, processing, extraction, and utilization of information. In its most abstract form, information is conceived as a means of resolving uncertainty. Shannon and Weaver (1949) were…

计算机与社会 · 计算机科学 2021-12-08 Birgitta Dresp-Langley

Most controlled natural languages (CNLs) are processed with the help of a pipeline architecture that relies on different software components. We investigate in this paper in an experimental way how well answer set programming (ASP) is…

计算与语言 · 计算机科学 2014-08-12 Rolf Schwitter

Metabolic networks perform some of the most fundamental functions in living cells, including energy transduction and building block biosynthesis. While these are the best characterized networks in living systems, understanding their…

分子网络 · 定量生物学 2010-04-05 W. J. Riehl , P. L. Krapivsky , S. Redner , D. Segre

Artificial intelligence (AI) is transforming scientific research, with explainable AI methods like concept-based models (CMs) showing promise for new discoveries. However, in molecular science, CMs are less common than black-box models like…

人工智能 · 计算机科学 2024-12-17 Zimin Zhang , Qianli Wu , Botao Xia , Fang Sun , Ziniu Hu , Yizhou Sun , Shichang Zhang

Intelligent information systems that contain emergent elements often encounter trust problems because results do not get sufficiently explained and the procedure itself can not be fully retraced. This is caused by a control flow depending…

计算机与社会 · 计算机科学 2021-04-30 Michael Guckert , Nils Gumpfer , Jennifer Hannig , Till Keller , Neil Urquhart

Several abstract machines that operate on symbolic input alphabets have been proposed in the last decade, for example, symbolic automata or lattice automata. Applications of these types of automata include software security analysis and…

形式语言与自动机理论 · 计算机科学 2019-10-18 Andreas Stahlbauer

Shapes of cognition is a new conceptual paradigm for the computational cognitive modeling of Language-Endowed Intelligent Agents (LEIAs). Shapes are remembered constellations of sensory, linguistic, conceptual, episodic, and procedural…

人工智能 · 计算机科学 2025-09-17 Marjorie McShane , Sergei Nirenburg , Sanjay Oruganti , Jesse English

The pursuit of artificial consciousness requires conceptual clarity to navigate its theoretical and empirical challenges. This paper introduces a composite, multilevel, and multidimensional model of consciousness as a heuristic framework to…

人工智能 · 计算机科学 2025-01-03 K. Evers , M. Farisco , R. Chatila , B. D. Earp , I. T. Freire , F. Hamker , E. Nemeth , P. F. M. J. Verschure , M. Khamassi

Organic chemistry is undergoing a major paradigm shift, moving from a labor-intensive approach to a new era dominated by automation and artificial intelligence (AI). This transformative shift is being driven by technological advances, the…

人工智能 · 计算机科学 2023-12-05 Chengchun Liu , Yuntian Chen , Fanyang Mo

This paper outlines a conceptual framework for understanding recent developments in information retrieval and natural language processing that attempts to integrate dense and sparse retrieval methods. I propose a representational approach…

信息检索 · 计算机科学 2021-12-30 Jimmy Lin

Symbolic control is an abstraction-based controller synthesis approach that provides, algorithmically, certifiable-by-construction controllers for cyber-physical systems. Symbolic control approaches usually assume that full-state…

系统与控制 · 电气工程与系统科学 2022-11-01 Mahmoud Khaled , Kuize Zhang , Majid Zamani

Chemical reactions occur in energy, environmental, biological, and many other natural systems, and the inference of the reaction networks is essential to understand and design the chemical processes in engineering and life sciences. Yet,…

分子网络 · 定量生物学 2021-01-22 Weiqi Ji , Sili Deng

Consciousness is a sequential process of awareness which can focus on one piece of information at a time. This process of awareness experiences causation which underpins the notion of time while it interplays with matter and energy, forming…

神经元与认知 · 定量生物学 2023-01-24 Mahendra Samarawickrama

Atomic-level modeling performed at large scales enables the investigation of mesoscale materials properties with atom-by-atom resolution. The spatial complexity of such cross-scale simulations renders them unsuitable for simple human visual…

材料科学 · 物理学 2022-04-05 Heejung Chung , Rodrigo Freitas , Gowoon Cheon , Evan J. Reed

In this paper, we consider two of the currently popular semantic frameworks: Abstract Meaning Representation (AMR)a more abstract framework, and Universal Conceptual Cognitive Annotation (UCCA)-an anchored framework. We use a corpus-based…

人工智能 · 计算机科学 2022-07-26 Siyana Pavlova , Maxime Amblard , Bruno Guillaume
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