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We consider staged self-assembly systems, in which square-shaped tiles can be added to bins in several stages. Within these bins, the tiles may connect to each other, depending on the glue types of their edges. Previous work by Demaine et…

数据结构与算法 · 计算机科学 2017-01-03 Erik D. Demaine , Sándor P. Fekete , Christian Scheffer , Arne Schmidt

We consider a model of algorithmic self-assembly of geometric shapes out of square Wang tiles studied in SODA 2010, in which there are two types of tiles (e.g., constructed out of DNA and RNA material) and one operation that destroys all…

计算复杂性 · 计算机科学 2010-07-09 Erik D. Demaine , Matthew J. Patitz , Robert T. Schweller , Scott M. Summers

In this paper, we investigate shape-assembling power of a tile-based model of self-assembly called the Signal-Passing Tile Assembly Model (STAM). In this model, the glues that bind tiles together can be turned on and off by the binding…

形式语言与自动机理论 · 计算机科学 2022-06-09 Andrew Alseth , Daniel Hader , Matthew J. Patitz

In this paper we present a model containing modifications to the Signal-passing Tile Assembly Model (STAM), a tile-based self-assembly model whose tiles are capable of activating and deactivating glues based on the binding of other glues.…

新兴技术 · 计算机科学 2022-03-30 Andrew Alseth , Daniel Hader , Matthew J. Patitz

The algorithmic self-assembly of shapes has been considered in several models of self-assembly. For the problem of \emph{shape construction}, we consider an extended version of the Two-Handed Tile Assembly Model (2HAM), which contains…

计算几何 · 计算机科学 2016-08-18 Austin Luchsinger , Robert Schweller , Tim Wylie

In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla, Liu, and Seeman to…

In this paper, we investigate the abilities of systems of self-assembling tiles which can each pass a constant number of signals to their immediate neighbors to create replicas of input shapes. Namely, we work within the Signal-passing Tile…

新兴技术 · 计算机科学 2022-04-05 Andrew Alseth , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Algorithmic self-assembly, a generalization of crystal growth processes, has been proposed as a mechanism for autonomous DNA computation and for bottom-up fabrication of complex nanostructures. A `program' for growing a desired structure…

材料科学 · 物理学 2010-01-08 Rebecca Schulman , Erik Winfree

The paper presents a concept/technique to compress and synthesize complex material morphologies that is based on Wang tilings. Specifically, a microstructure is stored in a set of Wang tiles and its reconstruction is performed by means of a…

材料科学 · 物理学 2014-12-18 Martin Doškář , Jan Novák , Jan Zeman

Patterned self-assembly is a process whereby coloured tiles self-assemble to build a rectangular coloured pattern. We propose self-assembly (SA) hypergraph automata as an automata-theoretic model for patterned self-assembly. We investigate…

离散数学 · 计算机科学 2013-02-13 Lila Kari , Steffen Kopecki , Amirhossein Simjour

In this paper, we introduce a novel design paradigm for modular architectured materials that allows for spatially nonuniform designs from a handful of building blocks, which can be robotically assembled for efficient and scalable…

材料科学 · 物理学 2023-10-17 Martin Doškář , Michael Somr , Radim Hlůžek , Jan Havelka , Jan Novák , Jan Zeman

Tile-based self-assembly systems are capable of universal computation and algorithmically-directed growth. Systems capable of such behavior typically make use of "glue cooperation" in which the glues on at least $2$ sides of a tile must…

新兴技术 · 计算机科学 2019-03-15 Daniel Hader , Matthew J. Patitz

We analyze the number of tile types $t$, bins $b$, and stages necessary to assemble $n \times n$ squares and scaled shapes in the staged tile assembly model. For $n \times n$ squares, we prove $\mathcal{O}(\frac{\log{n} - tb - t\log t}{b^2}…

计算几何 · 计算机科学 2016-09-14 Cameron Chalk , Eric Martinez , Robert Schweller , Luis Vega , Andrew Winslow , Tim Wylie

In the abstract Tile Assembly Model, self-assembling systems consisting of tiles of different colors can form structures on which colored patterns are ``painted.'' We explore the complexity, in terms of the numbers of unique tile types…

新兴技术 · 计算机科学 2024-03-12 Phillip Drake , Matthew J. Patitz , Scott M. Summers , Tyler Tracy

Microstructural geometry plays a critical role in the response of heterogeneous materials. Consequently, methods for generating microstructural samples are increasingly crucial to advanced numerical analyses. We extend Sonon et al.'s…

计算几何 · 计算机科学 2020-03-13 Martin Doškář , Jan Zeman , Daniel Rypl , Jan Novák

Self-assembly is a process which is ubiquitous in natural, especially biological systems. It occurs when groups of relatively simple components spontaneously combine to form more complex structures. While such systems have inspired a large…

计算几何 · 计算机科学 2018-07-19 Jerome Durand-Lose , Jacob Hendricks , Matthew J. Patitz , Ian Perkins , Michael Sharp

We prove that the abstract Tile Assembly Model (aTAM) of nanoscale self-assembly is intrinsically universal. This means that there is a single tile assembly system U that, with proper initialization, simulates any tile assembly system T.…

数据结构与算法 · 计算机科学 2012-04-10 David Doty , Jack H. Lutz , Matthew J. Patitz , Robert T. Schweller , Scott M. Summers , Damien Woods

In the abstract Tile Assembly Model (aTAM) square tiles self-assemble, autonomously binding via glues on their edges, to form structures. Algorithmic aTAM systems can be designed in which the patterns of tile attachments are forced to…

新兴技术 · 计算机科学 2022-11-10 Andrew Alseth , Matthew J. Patitz

We prove a result which strongly hints at the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile…

计算复杂性 · 计算机科学 2016-10-28 Pierre-Étienne Meunier , Damien Regnault

Self-limiting assembly of particles represents the state-of-the-art controllability in nanomanufacturing processes where the assembly stops at a designated stage1,2, providing a desirable platform for applications requiring delicate…

原子与分子团簇 · 物理学 2021-11-02 Liang Zhao , Bchara Sidnawi , Jichao Fan , Ruiyang Chen , Thomas Scully , Scott Dietrich , Weilu Gao , Qianhong Wu , Bo Li
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