English

Dynamical Scaling Exponents for Polymer Translocation through a Nanopore

Soft Condensed Matter 2008-11-08 v2 Statistical Mechanics

Abstract

We determine the scaling exponents of polymer translocation (PT) through a nanopore by extensive computer simulations of various microscopic models for chain lengths extending up to N=800 in some cases. We focus on the scaling of the average PT time τNα\tau \sim N^{\alpha} and the mean-square change of the PT coordinate <s2(t)>tβ<s^2(t)> \sim t^\beta. We find α=1+2ν\alpha=1+2\nu and β=2/α\beta=2/\alpha for unbiased PT in 2D and 3D. The relation αβ=2\alpha \beta=2 holds for driven PT in 2D, with crossover from α2ν\alpha \approx 2\nu for short chains to α1+ν\alpha \approx 1+\nu for long chains. This crossover is, however, absent in 3D where α=1.42±0.01\alpha = 1.42 \pm 0.01 and αβ2.2\alpha \beta \approx 2.2 for N40800N \approx 40-800.

Keywords

Cite

@article{arxiv.0805.4312,
  title  = {Dynamical Scaling Exponents for Polymer Translocation through a Nanopore},
  author = {Kaifu Luo and Santtu T. T. Ollila and Ilkka Huopaniemi and Tapio Ala-Nissila and Pawel Pomorski and Mikko Karttunen and See-Chen Ying and Aniket Bhattacharya},
  journal= {arXiv preprint arXiv:0805.4312},
  year   = {2008}
}

Comments

4 pages, 4 figures, minor changes in the text, To be published in: Phys. Rev. E 78, xxxxxx(R) (2008)

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