English

Driven polymer translocation through a nanopore: a manifestation of anomalous diffusion

Statistical Mechanics 2007-07-29 v4 Soft Condensed Matter

Abstract

We study the translocation dynamics of a polymer chain threaded through a nanopore by an external force. By means of diverse methods (scaling arguments, fractional calculus and Monte Carlo simulation) we show that the relevant dynamic variable, the translocated number of segments s(t)s(t), displays an {\em anomalous} diffusive behavior even in the {\em presence} of an external force. The anomalous dynamics of the translocation process is governed by the same universal exponent α=2/(2ν+2γ1)\alpha = 2/(2\nu +2 - \gamma_1), where ν\nu is the Flory exponent and γ1\gamma_1 - the surface exponent, which was established recently for the case of non-driven polymer chain threading through a nanopore. A closed analytic expression for the probability distribution function W(s,t)W(s, t), which follows from the relevant {\em fractional} Fokker - Planck equation, is derived in terms of the polymer chain length NN and the applied drag force ff. It is found that the average translocation time scales as τf1N2α1\tau \propto f^{-1}N^{\frac{2}{\alpha} -1}. Also the corresponding time dependent statistical moments, <s(t)>tα< s(t) > \propto t^{\alpha} and <s(t)2>t2α< s(t)^2 > \propto t^{2\alpha} reveal unambiguously the anomalous nature of the translocation dynamics and permit direct measurement of α\alpha in experiments. These findings are tested and found to be in perfect agreement with extensive Monte Carlo (MC) simulations.

Keywords

Cite

@article{arxiv.cond-mat/0702463,
  title  = {Driven polymer translocation through a nanopore: a manifestation of anomalous diffusion},
  author = {J. L. A. Dubbeldam and A. Milchev and V. G. Rostiashvili and T. A. Vilgis},
  journal= {arXiv preprint arXiv:cond-mat/0702463},
  year   = {2007}
}

Comments

6 pages, 4 figures, accepted to Europhys. Lett; some references were supplemented; typos were corrected