Polymer translocation into a fluidic channel through a nanopore
Abstract
Using two dimensional Langevin dynamics simulations, we investigate the dynamics of polymer translocation into a fluidic channel with diameter through a nanopore under a driving force . Due to the crowding effect induced by the partially translocated monomers, the translocation dynamics is significantly altered in comparison to an unconfined environment, namely, we observe a nonuniversal dependence of the translocation time on the chain length . initially decreases rapidly and then saturates with increasing , and a dependence of the scaling exponent of with on the channel width is observed. The otherwise inverse linear scaling of with breaks down and we observe a minimum of as a function of . These behaviors are interpreted in terms of the waiting time of an individual segment passing through the pore during translocation.
Cite
@article{arxiv.1008.2272,
title = {Polymer translocation into a fluidic channel through a nanopore},
author = {Kaifu Luo and Ralf Metzler},
journal= {arXiv preprint arXiv:1008.2272},
year = {2010}
}
Comments
8 pages, 12 figures. To appear in Phys. Rev. E