English

Driven polymer translocation through a cylindrical nanochannel: Interplay between the channel length and the chain length

Soft Condensed Matter 2012-03-26 v1 Statistical Mechanics Biomolecules

Abstract

Using analytical techniques and Langevin dynamics simulations, we investigate the dynamics of polymer translocation through a nanochannel embedded in two dimensions under an applied external field. We examine the translocation time for various ratio of the channel length LL to the polymer length NN. For short channels LNL\ll N, the translocation time τN1+ν\tau \sim N^{1+\nu} under weak driving force FF, while τF1L\tau\sim F^{-1}L for long channels LNL\gg N, independent of the chain length NN. Moreover, we observe a minimum of translocation time as a function of L/NL/N for different driving forces and channel widths. These results are interpreted by the waiting time of a single segment.

Keywords

Cite

@article{arxiv.1203.5118,
  title  = {Driven polymer translocation through a cylindrical nanochannel: Interplay between the channel length and the chain length},
  author = {Huaisong Yong and Yilin Wang and Shichen Yuan and Bi Xu and Kaifu Luo},
  journal= {arXiv preprint arXiv:1203.5118},
  year   = {2012}
}

Comments

7 pages, 10 figures