BioNetGen 2.2：基于规则的建模进展
定量方法
2016-11-21 v2 分子网络
摘要
BioNetGen 是一个用于复杂生化系统基于规则建模的开源软件包。该软件的 2.2 版本为模型规范说明和模拟引入了许多新功能。在此，我们报告这些新增内容，讨论它们如何促进比以往更大、更复杂模型的构建、模拟与分析。
引用
@article{arxiv.1507.03572,
title = {BioNetGen 2.2: Advances in Rule-Based Modeling},
author = {Leonard A. Harris and Justin S. Hogg and Jose-Juan Tapia and John A. P. Sekar and Sanjana A. Gupta and Ilya Korsunsky and Arshi Arora and Dipak Barua and Robert P. Sheehan and James R. Faeder},
journal= {arXiv preprint arXiv:1507.03572},
year = {2016}
}
备注
3 pages, 1 figure, 1 supplementary text file. Supplementary text includes a brief discussion of the RK-PLA along with a performance analysis, two tables listing all new actions/arguments added in BioNetGen 2.2, and the "BioNetGen Quick Reference Guide". Accepted for publication in Bioinformatics