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Rapid changes in extracellular osmolarity are one of many insults microbial cells face on a daily basis. To protect against such shocks, Escherichia coli and other microbes express several types of transmembrane channels which open and…

Cell Behavior · Quantitative Biology 2018-06-05 Griffin Chure , Heun Jin Lee , Rob Phillips

The effects of cell size and deformability on the lateral migration and deformation of living cells flowing through a rectangular microchannel has been numerically investigated and compared with the inertial-microfluidics data on detection…

Fluid Dynamics · Physics 2013-06-21 Hongzhi Lan , Soojung Claire Hur , Dino Di Carlo , Damir B. Khismatullin

Transmembrane ion flow through channel proteins undergoing density fluctuations may cause lateral gradients of the electrical potential across the membrane giving rise to electrophoresis of charged channels. A model for the dynamics of the…

Pattern Formation and Solitons · Physics 2009-11-11 Markus Hilt , Walter Zimmermann

We employ dual-gated 30{\deg}-twisted bilayer graphene to demonstrate simultaneous ultra-high mobility and conductivity (up to 40 mS at room temperature), unattainable in a single-layer of graphene. We find quantitative agreement with a…

Mesoscale and Nanoscale Physics · Physics 2022-01-12 Giulia Piccinini , Vaidotas Mišeikis , Kenji Watanabe , Takashi Taniguchi , Camilla Coletti , Sergio Pezzini

We present a mechanism for a generic and powerful force of assembly and mobility for transmembrane proteins in lipid bilayers. This force is a pre-transition (or pre-melting) effect for the first-order transition between ordered and…

The assembly of proteins in membranes plays a key role in many crucial cellular pathways. Despite their importance, characterizing transmembrane assembly remains challenging for experiments and simulations. Equilibrium molecular dynamics…

Soft Condensed Matter · Physics 2024-08-05 Emil Jackel , Gianmarco Lazzeri , Roberto Covino

The liquid crystalline model biomembrane system consisting of a stack of interacting membranes is studied by the newly developed Fourier Monte Carlo simulation technique. In comparison to perturbation theory, substantial quantitative…

Biological Physics · Physics 2007-05-23 Nikolai Gouliaev , John F. Nagle

The red blood cell (RBC) membrane is composed of a lipid bilayer and a cytoskeleton interconnected by protein junction complexes, allowing for potential sliding between the lipid bilayer and the cytoskeleton. Despite this biological…

Fluid Dynamics · Physics 2024-01-23 V. Puthumana , P. G. Chen , M. Leonetti , R. Lasserre , M. Jaeger

Twisted bilayer materials have attracted tremendous attention due to their unique and novel properties. Here, we derive a thermodynamic model for twisted bilayer graphene (tBLG) within the framework of the classical statistical mechanics,…

Mesoscale and Nanoscale Physics · Physics 2021-11-09 Weidong Yan , Langquan Shui , Wengen Ouyang , Ze Liu

The dynamic deformation upon stretching of Ni nanowires as those formed with mechanically controllable break junctions or with a scanning tunneling microscope is studied both experimentally and theoretically. Molecular dynamics simulations…

Mesoscale and Nanoscale Physics · Physics 2009-06-18 M. R. Calvo , M. J. Caturla , D. Jacob , C. Untiedt , J. J. Palacios

We present a mesoscopic model of the fluid-wall interactions for flows in microchannel geometries. We define a suitable implementation of the boundary conditions for a discrete version of the Boltzmann equations describing a wall-bounded…

Chaotic Dynamics · Physics 2007-06-13 R. Benzi , L. Biferale , M. Sbragaglia , S. Succi , F. Toschi

We analyze the dynamics of liquid filling in a thin, slightly inflated rectangular channel driven by capillary forces. We show that although the amount of liquid $m$ in the channel increases in time following the classical Lucas-Washburn…

Soft Condensed Matter · Physics 2022-05-18 Chen Zhao , Tian Yu , Jiajia Zhou , Masao Doi

Simulating protein-membrane interactions is an important and dynamic area of research. A proper definition of electrostatic forces on membrane surfaces is necessary for developing electromechanical models of protein-membrane interactions.…

Analysis of PDEs · Mathematics 2013-09-24 Michael Mikucki , Y. C. Zhou

The layer-resolved quantum transport response of a twisted bilayer graphene device is investigated by driving a current through the bottom layer and measuring the induced voltage in the top layer. Devices with four- and eight-layer…

Mesoscale and Nanoscale Physics · Physics 2025-06-18 Matheus H. Gobbo Kuhn , L. A. Silva , D. A. Bahamon

Thermoresponsive microgels are soft colloids that find widespread use as model systems for soft matter physics. Their complex internal architecture, made of a disordered and heterogeneous polymer network, has been so far a major challenge…

Although there are theoretical studies on the thermodynamics of ion channels, an investigation involving the thermodynamics of coupled channels has not been proposed. To overcome this issue, we developed calculations to present a…

Biological Physics · Physics 2022-08-29 D. O. C. Santos , M. A. S. Trindade , A. J. da Silva

Using molecular simulation and continuum dielectric theory, we consider how electrochemical kinetics are modulated by twist angle in bilayer graphene electrodes. By establishing a connection between twist angle and the screening length of…

Statistical Mechanics · Physics 2024-11-06 Leonardo Coello Escalante , David T. Limmer

The conformations of semiflexible (bio)polymers are studied in flow through geometrically structured microchannels. Using mesoscale hydrodynamics simulations, we show that the polymer undergoes a rod-to-helix transition as it moves from the…

Soft Condensed Matter · Physics 2012-10-24 Raghunath Chelakkot , Roland G. Winkler , Gerhard Gompper

The diffusion of energy that is locally deposited into two-dimensional electron gases by Joule heating generates transverse voltages across devices with broken symmetry. For mesoscopic structures characterized by device dimensions…

Mesoscale and Nanoscale Physics · Physics 2014-11-19 Stephan Rojek , Jürgen König

Metasurfaces have extensive potential in acoustic cloaking, optical scattering, and electromagnetic antenna due to their unprecedented properties and the ability to conform to curved substrates. Active metasurfaces have attracted…

Applied Physics · Physics 2023-04-13 Jay Sim , Shuai Wu , Jize Dai , Ruike Renee Zhao
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