Related papers: A crystal base for the genetic code
The genetic code maps the sixty-four nucleotide triplets (codons) to twenty amino-acids. While the biochemical details of this code were unraveled long ago, its origin is still obscure. We review information-theoretic approaches to the…
A heuristic diagram of the evolution of the standard genetic code is presented. It incorporates, in a way that resembles the energy levels of an atom, the physical notion of broken symmetry and it is consistent with original ideas by Crick…
This paper develops a geometric model for coupled two-state quantum systems (qubits), which is formulated using geometric (aka Clifford) algebra. It begins by showing how Euclidean spinors can be interpreted as entities in the geometric…
The Z_64-algebra of the genetic code and DNA sequences of length N was recently stated. In order to beat the limits of this structure such as the impossibility of non-coding region analysis in genomes and the impossibility of the insertions…
Reference-guided DNA sequencing and alignment is an important process in computational molecular biology. The amount of DNA data grows very fast, and many new genomes are waiting to be sequenced while millions of private genomes need to be…
A universal quantum computing scheme, with a universal set of logical gates, is proposed based on networks of 1D quantum systems. The encoding of information is in terms of universal features of gapped phases, for which effective field…
A quaternionic representation of the genetic code, previously reported by the authors, is updated in order to incorporate chirality of nucleotide bases and amino acids. The original representation assigns to each nucleotide base a prime…
A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex…
The origin and organizing principles of the genetic code remain fundamental puzzles in life science. The vanishingly low probability of the natural codon-to-amino acid mapping arising by chance has spurred the hypothesis that its structure…
A new type of local-check additive quantum code is presented. Qubits are associated with edges of a 2-dimensional lattice whereas the stabilizer operators correspond to the faces and the vertices. The boundary of the lattice consists of…
A semifinite spectral triple for an algebra canonically associated to canonical quantum gravity is constructed. The algebra is generated by based loops in a triangulation and its barycentric subdivisions. The underlying space can be seen as…
The set of known dialects of the genetic code (GC) is analyzed from the viewpoint of the genetic octave Yin-Yang-algebra. This algebra was described in the previous author's publications. The algebra was discovered on the basis of…
With small-scale quantum processors transitioning from experimental physics labs to industrial products, these processors allow us to efficiently compute important algorithms in various fields. In this paper, we propose a quantum algorithm…
Symmetry adapted bases in quantum chemistry and bases adapted to quantum information share a common characteristics: both of them are constructed from subspaces of the representation space of the group SO(3) or its double group (i.e.,…
We use the theory of $\textbf{U}_q$-tilting modules to construct cellular bases for centralizer algebras. Our methods are quite general and work for any quantum group $\textbf{U}_q$ attached to a Cartan matrix and include the non-semisimple…
The tensor powers of the vector representation associated to an infinite rank quantum group decompose into irreducible components with multiplicities independant of the infinite root system considered. Although the irreducible modules…
The relation of crystal bases with $q$-identities is discussed, and some new results on crystals and $q$-identities associated with the affine Lie algebra $C_n^{(1)}$ are presented.
For the quantum algebra U_q(gl(n+1)) in its reduction on the subalgebra U_q(gl(n)) an explicit description of a Mickelsson-Zhelobenko reduction Z-algebra Z_q(gl(n+1),gl(n)) is given in terms of the generators and their defining relations.…
The article is devoted to phenomena of symmetries and algebras in matrix presentations of the genetic code. The Kronecker family of the genetic matrices is investigated, which is based on the alphabetical matrix [C A; U G], where C, A, U, G…
It is possible to interpret text as numbers (and vice versa) if one interpret letters and other characters as digits and assume that they have an inherent immutable ordering. This is demonstrated by the conventional digit set of the…