Related papers: A crystal base for the genetic code
The genetic code is the function from the set of codons to the set of amino acids by which a DNA sequence encodes proteins. Since the codons also influence the shape of the DNA molecule itself, the same sequence that encodes a protein also…
The quotient of a Boolean algebra by a cyclic group is proven to have a symmetric chain decomposition. This generalizes earlier work of Griggs, Killian and Savage on the case of prime order, giving an explicit construction for any order,…
This paper is devoted to analize inside the infinitely many possible bases of Uq(g), same that can be considered "more equal then others". The element of selection has been a privileged relation with the bialgebra. A new parameter z' has…
A plausible architecture of an ancient genetic code is derived from an extended base triplet vector space over the Galois field of the extended base alphabet {D, G, A, U, C}, where the letter D represents one or more hypothetical bases with…
We reconstruct the quantum enveloping superalgebra ${\bf U}(\mathfrak{gl}_{m|n})$ over $\mathbb Q(v)$ via (finite dimensional) quantum Schur superalgebras. In particular, we obtain a new basis containing the standard generators of ${\bf…
In the present work, 16 genetic code doublets and their cognate amino acids in the genetic code are fitted into a polyhedron model. Based on the structural regularity in nucleobases, and by using a series of common-sense topological…
Crystal base of the level 0 part of the modified quantum affine algebra $\widetilde U_q(\widehat{sl_2})_0$ is given by path. Weyl group actions, extremal vectors and crystal structure of all irreducible components are described explicitly.
We introduce a semisimple tensor category $\mc{O}^{int}_q(m|n)$ of modules over an quantum ortho-symplectic superalgebra. It is a natural counterpart of the category of finitely dominated integrable modules over the quantum classical…
The genetic code is the set of rules by which information encoded in genetic material (DNA or RNA sequences) is translated into proteins (amino acid sequences) by living cells. The code defines a mapping between tri-nucleotide sequences,…
For each $n\geqslant3$, we construct an uncountable family of models of the crystal of the basic $U_q(\hat{\mathfrak{sl}}_n)$-module. These models are all based on partitions, and include the usual $n$-regular and $n$-restricted models, as…
A codon table is a useful tool for mapping codons to amino acids as they have been assigned by nature. It has become a scientific icon because of the way it embodies our understanding of this natural process and the way it immediately…
Continuing our attempt to explain the degeneracy of the genetic code using basic classical Lie superalgebras, we present the branching schemes for the typical codon representations (typical 64-dimensional irreducible representations) of…
As a natural generalization of ordinary Lie algebras we introduce the concept of quantum Lie algebras ${\cal L}_q(g)$. We define these in terms of certain adjoint submodules of quantized enveloping algebras $U_q(g)$ endowed with a quantum…
The quantum co-ordinate algebra $A_{q}(\mathfrak{g})$ associated to a Kac-Moody Lie algebra $\mathfrak{g}$ forms a Hopf algebra whose comodules are precisely the $U_{q}(\mathfrak{g})$ modules in the BGG category…
The genetic code structure into distinct multiplet-classes as well as the numeric degeneracies of the latter are revealed by a two-step process. First, an empirical inventory of the degeneracies (of the shuffled multiplets) in two specific…
Error operator bases for systems of any dimension are defined and natural generalizations of the bit/sign flip error basis for qubits are given. These bases allow generalizing the construction of quantum codes based on eigenspaces of…
Explicit expressions for the generators of the quantum superalgebra $U_q[gl(n/m)]$ acting on a class of irreducible representations are given. The class under consideration consists of all essentially typical representations: for these a…
Algebraic properties of the genetic code are analyzed. The investigations of the genetic code on the basis of matrix approaches ("matrix genetics") are described. The degeneracy of the vertebrate mitochondria genetic code is reflected in…
By removing a $^{12}C$ atom from the tetrahedral configuration of the diamond, replace it by a $^{13}C$ atom, and repeating this in a linear direction, it is possible to have a linear chain of nuclear spins one half and to build a solid…
The genetic code maps the sixty-four nucleotide triplets (codons) to twenty amino-acids. Some argue that the specific form of the code with its twenty amino-acids might be a 'frozen accident' because of the overwhelming effects of any…