Related papers: A crystal base for the genetic code
The paper represents three supplements to the source paper, q-bio/0610044 [q-bio.OT], with three new series of harmonic structures of the genetic code, determined by Gauss arithmetical algorithm; by Table of Minimal Adding, as in…
Qubits are a great way to build a quantum computer, but a limited way to program one. We replace the usual "states and gates" formalism with a "props and ops" (propositions and operators) model in which (a) the C*-algebra of observables…
Signal processing (SP) techniques convert DNA and protein sequences into information that lead to successful drug discovery. One must, however, be aware about the difference between information and entropy1. Eight other physical properties…
Clifford algebras are used for definition of spinors. Because of using spin-1/2 systems as an adequate model of quantum bit, a relation of the algebras with quantum information science has physical reasons. But there are simple mathematical…
Important aspects of the process of information storage and retrieval in DNA and RNA, and its evolution, are the role of the anticodons and associated $t$RNA's, and correlations between anticodons and amino acids; the degeneracy of the…
Owing to their rich internal structure and significant long-range interactions, ultracold molecules have been widely explored as carriers of quantum information. Several different schemes for encoding qubits into molecular states, both bare…
We give a crystal structure on the set of all irreducible components of Lagrangian subvarieties of quiver varieties. One con show that, as a crystal, it is isomorphic to the crystal base of an irreducible highest weight representation of a…
In a certain way, this paper presents the continuation of the previous one which discussed the harmonic structure of the genetic code (Rakocevic, 2004). Several new harmonic structures presented in this paper, through specific unity and…
We explore combinatorics associated with the degenerate Hecke algebra at $q=0$, obtaining a formula for a system of orthogonal idempotents, and also exploring various pattern avoidance results. Generalizing constructions for the 0-Hecke…
The crystal base of the modified quantized enveloping algebras of type $A_{+\infty}$ or $A_\infty$ is realized as a set of integral bimatrices. It is obtained by describing the decomposition of the tensor product of a highest weight crystal…
The Clifford algebra over the three-dimensional real linear space includes its linear structure and its exterior algebra, the subspaces spanned by multivectors of the same degree determine a gradation of the Clifford algebra. Through these…
We introduce Natural Qubit Algebra (NQA), a compact real operator calculus for qubit systems based on a $2\times2$ block alphabet $\{I,X,Z,W\}\subset\mathrm{Mat}(2,\mathbb{R})$ and tensor-word representations. The resulting multiplication…
Quantum algebras are a mathematical tool which provides us with a class of symmetries wider than that of Lie algebras, which are contained in the former as a special case. After a self-contained introduction to the necessary mathematical…
A Souslin algebra is a complete Boolean algebra whose main features are ruled by a tight combination of an antichain condition with an infinite distributive law. The present article divides into two parts. In the first part a representation…
In this paper it is shown that within a Combined Genetic Code Table, realized through a combination of Watson-Crick Table and Codon Path Cube it exists, without an exception, a strict distinction between two classes of enzymes…
Let $\mathcal{O}^{int}_q(m|n)$ be a semisimple tensor category of modules over a quantum ortho-symplectic superalgebra of type $B, C, D$ introduced in the author's previous work. It is a natural counterpart of the category of finitely…
Given M copies of a q-deformed Weyl or Clifford algebra in the defining representation of a quantum group $G_q$, we determine a prescription to embed them into a unique, inclusive $G_q$-covariant algebra. The different copies are "coupled"…
Information theoretic analysis of genetic languages indicates that the naturally occurring 20 amino acids and the triplet genetic code arose by duplication of 10 amino acids of class-II and a doublet genetic code having codons NNY and…
How to represent the genetic code? Despite the fact that it is extensively known, the DNA mapping into proteins remains as one of the relevant discoveries of genetics. However, modern genomic signal processing usually requires converting…
Crystal tensor operators, which tranform under U_q->0(sl(2)), in analogous way as the vectors of the crystal basis, are introduced. The Wigner-Eckart theorem for the crystal tensor is defined: the selection rules depend on the initial state…