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We study a one-dimensional chain of identical atoms with two electronic orbitals and two electrons per atom, subject to an external oscillating pressure that periodically modulates the lattice spacing. This leads to time-dependent intra-…

Mesoscale and Nanoscale Physics · Physics 2025-11-18 Anwesha Chattopadhyay

How natural communication sounds are spatially represented across the inferior colliculus, the main center of convergence for auditory information in the midbrain, is not known. The neural representation of the acoustic stimuli results from…

Neurons and Cognition · Quantitative Biology 2016-07-01 Dominika Lyzwa , Florentin Wörgötter

Inspired by the synchronized beating of cilia, we show that the collective dynamics of hair-like fibers in a meniscus during fast drainage enables their self-organization into multiple topologies including complex shape inversions. By…

Soft Condensed Matter · Physics 2017-02-16 Dongwoo Shin , Sameh Tawfick

We study the oscillation spectrum and acoustic properties of a liquid drop in the phase-separated fluid when the interfacial dynamics of phase conversion can be described in terms of the kinetic growth coefficient. For a readily mobile…

Soft Condensed Matter · Physics 2007-05-23 S. N. Burmistrov , T. Satoh

Many membrane channels and receptors exhibit adaptive, or desensitized, response to a strong sustained input stimulus, often supported by protein activity-dependent inactivation. Adaptive response is thought to be related to various…

Molecular Networks · Quantitative Biology 2015-03-13 Tamar Friedlander , Naama Brenner

Author summary: Synchronization of neuronal spiking in the brain is related to cognitive functions, such as perception, attention, and memory. It is therefore important to determine which properties of neurons influence their collective…

Neurons and Cognition · Quantitative Biology 2013-11-06 Josef Ladenbauer , Moritz Augustin , LieJune Shiau , Klaus Obermayer

Since the earliest electroencephalography experiments, large scale oscillations have been observed in the mammalian brain. More recently, episodes of oscillation and bursting have been identified not only in the cerebral cortex and…

Neurons and Cognition · Quantitative Biology 2025-09-03 Daniel Pouzzner

The transfer of mechanical signals through cells is a complex phenomenon. To uncover a new mechanotransduction pathway, we study the frequency-dependent transport of mechanical stimuli by single microtubules and small networks in a…

Biological Physics · Physics 2017-05-03 M. D. Koch , N. Schneider , P. Nick , A. Rohrbach

Controlling growth via cell division is crucial in the development of higher organisms, and yet the mechanisms through which this is achieved, e.g., in epithelial tissue, is not yet fully understood. We show that by coupling the cell cycle…

Tissues and Organs · Quantitative Biology 2024-06-11 Chandrashekar Kuyyamudi , Shakti N. Menon , Fernando Casares , Sitabhra Sinha

The paper highlights the role of a positive feedback gating mechanism at the cellular level in the robust- ness and modulation properties of rhythmic activities at the circuit level. The results are presented in the context of half-center…

Neurons and Cognition · Quantitative Biology 2014-12-22 Julie Dethier , Guillaume Drion , Alessio Franci , Rodolphe Sepulchre

Cortical neurons are bistable; as a consequence their local field potentials can fluctuate between quiescent and active states, generating slow 0.5-2 Hz oscillations which are widely known as transitions between Up and Down States. Despite…

Disordered Systems and Neural Networks · Physics 2015-06-05 Jorge Hidalgo , Luis F. Seoane , Jesus M. Cortes , Miguel A. Munoz

Organisms use hair-like cilia that beat in a metachronal fashion to actively transport fluid and suspended particles. Metachronal motion emerges due to a phase difference between beating cycles of neighboring cilia and appears as traveling…

Fluid Dynamics · Physics 2018-06-13 Srinivas Hanasoge , Peter J. Hesketh , Alexander Alexeev

Living cells adapt and respond actively to the mechanical properties of their environment. In addition to biochemical mechanotransduction, evidence exists for a myosin-dependent, purely mechanical sensitivity to the stiffness of the…

A stochastic model of intracellular calcium oscillations is analytically studied. The governing master equation is expanded under the linear noise approximation and a closed prediction for the power spectrum of fluctuations analytically…

Statistical Mechanics · Physics 2013-07-15 Laura Cantini , Claudia Cianci , Duccio Fanelli , Emma Massi , Luigi Barletti

The means by which neuronal activity yields robust behavior is a ubiquitous question in neuroscience. In the songbird, the timing of a highly stereotyped song motif is attributed to the cortical nucleus HVC, and to feedback to HVC from…

Neurons and Cognition · Quantitative Biology 2018-01-22 Eve Armstrong

Consecutive repetition of actions is common in behavioral sequences. Although integration of sensory feedback with internal motor programs is important for sequence generation, if and how feedback contributes to repetitive actions is poorly…

Neurons and Cognition · Quantitative Biology 2017-04-12 Jason Wittenbach , Kristofer E. Bouchard , Michael S. Brainard , Dezhe Z. Jin

This work proposes a two-dimensional electrophysiological model for describing neuronal responses to external electric stimuli under patch-clamped conditions. Our proposed model successfully captures the key features of the Hodgkin-Huxley…

Neurons and Cognition · Quantitative Biology 2023-12-13 Lízia Maria Gonçalves Branco , Rui Manuel Agostinho Dilão

Opto-mechanical oscillators that generate coherent acoustic waves are drawing much interest, in both fundamental research and applications. Narrowband oscillations can be obtained through the introduction of feedback to the acoustic wave.…

Optics · Physics 2018-11-16 H. Hagai Diamandi , Yosef London , Gil Bashan , Arik Bergman , Avi Zadok

Loss spikes commonly emerge during neural network training with the Adam optimizer across diverse architectures and scales, yet their underlying mechanism remains elusive. While previous explanations attribute these phenomena to sharper…

Machine Learning · Computer Science 2026-05-26 Zhiwei Bai , Zhangchen Zhou , Jiajie Zhao , Xiaolong Li , Zhiyu Li , Feiyu Xiong , Hongkang Yang , Yaoyu Zhang , Zhi-Qin John Xu

The cytoskeleton protein actin assembles into large bundles when supporting stresses in the cell, but grows into a fine branched network to induce cell motion. Such self-organization processes are studied in artificial networks of…

Soft Condensed Matter · Physics 2018-06-13 Adar Sonn-Segev , Anne Bernheim-Groswasser , Yael Roichman
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