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Cord-forming fungi form extensive networks that continuously adapt to maintain an efficient transport system. As osmotically driven water uptake is often distal from the tips, and aqueous fluids are incompressible, we propose that growth…

Tissues and Organs · Quantitative Biology 2010-05-31 Luke Heaton , Eduardo Lopez , Philip K. Maini , Mark D. Fricker , Nick S. Jones

Incoming sound is in cochlea and auditory nerve encoded into spike trains. At the third neuron of the auditory pathway, spike trains of the left and right sides are processed in brainstem nuclei to yield sound localization information. Two…

Neurons and Cognition · Quantitative Biology 2020-07-02 Petr Marsalek , Pavel Sanda , Zbynek Bures

The gain of neurons' responses in the auditory cortex is sensitive to contrast changes in the stimulus within a spectrotemporal range similar to their receptive fields, which can be interpreted to represent the tuning of the input to a…

Neurons and Cognition · Quantitative Biology 2013-10-23 Linus J. Schumacher , Geoff K. Nicholls

Brain rhythms contribute to every aspect of brain function. Here, we study critical and resonance phenomena that precede the emergence of brain rhythms. Using an analytical approach and simulations of a cortical circuit model of neural…

Disordered Systems and Neural Networks · Physics 2015-06-12 A. V. Goltsev , M. A. Lopes , K. -E. Lee , J. F. F. Mendes

How can a microorganism adapt to a variety of environmental conditions despite there exists a limited number of signal transduction machineries? We show that for any growing cells whose gene expression is under stochastic fluctuations,…

Molecular Networks · Quantitative Biology 2015-05-13 Chikara Furusawa , Kunihiko Kaneko

Oscillations represent a ubiquitous phenomenon in biological systems. The conventional models of biological periodic oscillations are usually proposed as interconnecting transcriptional feedback loops. Some specific proteins function as…

Pattern Formation and Solitons · Physics 2013-05-29 Yue Ma , Kenichi Yoshikawa

Spiral waves of excitation in cardiac tissue are associated with life-threatening cardiac arrhythmias. It is, therefore, important to study the electrophysiological factors that affect the dynamics of these spiral waves. By using an…

Biological Physics · Physics 2021-08-17 Mahesh Kumar Mulimani , Soling Zimik , Rahul Pandit

An auditory neuron can preserve the temporal fine structure of a low-frequency tone by phase-locking its response to the stimulus. Apart from sound localization, however, little is known about the role of this temporal information for…

Neurons and Cognition · Quantitative Biology 2012-09-21 Tobias Reichenbach , A. J. Hudspeth

Neural circuits are able to perform computations under very diverse conditions and requirements. The required computations impose clear constraints on their fine-tuning: a rapid and maximally informative response to stimuli in general…

Neurons and Cognition · Quantitative Biology 2019-10-22 Jens Wilting , Jonas Dehning , Joao Pinheiro Neto , Lucas Rudelt , Michael Wibral , Johannes Zierenberg , Viola Priesemann

Synchronized oscillations are of critical functional importance in many biological systems. We show that such oscillations can arise without centralized coordination in a disordered system of electrically coupled excitable and passive…

Adaptation and Self-Organizing Systems · Physics 2015-06-03 Rajeev Singh , Jinshan Xu , Nicolas Garnier , Alain Pumir , Sitabhra Sinha

Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological…

Cell Behavior · Quantitative Biology 2019-11-04 Gabriele Micali , Robert G. Endres

We demonstrate and experimentally validate an end-to-end hybrid CMOS-memristor auditory encoder that realises adaptive-threshold, asynchronous delta-modulation (ADM)-based spike encoding by exploiting the inherent volatility of HfTiOx…

Audio and Speech Processing · Electrical Eng. & Systems 2025-12-08 Dongxu Guo , Deepika Yadav , Patrick Foster , Spyros Stathopoulos , Mingyi Chen , Themis Prodromakis , Shiwei Wang

Neural activity exhibits a vast range of timescales that can be several fold larger than the membrane time constant of individual neurons. Two types of mechanisms have been proposed to explain this conundrum. One possibility is that large…

Neurons and Cognition · Quantitative Biology 2019-03-26 Manuel Beiran , Srdjan Ostojic

Optical oscillators present a powerful optimization mechanism. The inherent competition for the gain resources between possible modes of oscillation entails the prevalence of the most efficient single mode. We harness this 'ultrafast'…

Optics · Physics 2016-02-23 Avi Pe'er , Igal Aharonovich

Maintaining upright posture is a complex task governed by the integration of afferent sensorimotor and visual information with compensatory neuromuscular reactions. The objective of this work was to characterize the visual dependency and…

Quantitative Methods · Quantitative Biology 2019-02-28 KJ Edmunds , H Petersen , M Hassan , S Yassine , A Olivieri , F Barollo , R Friðriksdóttir , P Edmunds , MK Gíslason , A Fratini , P Gargiulo

Collective sensing by interacting cells is observed in a variety of biological systems, and yet a quantitative understanding of how sensory information is collectively encoded is lacking. Here we investigate the ATP-induced calcium dynamics…

Cell Behavior · Quantitative Biology 2017-09-20 Garrett D Potter , Tommy A Byrd , Andrew Mugler , Bo Sun

Neuronal calcium (Ca2+) signaling represents a molecular trigger for diverse central nervous system adaptations and maladaptions. The altered function of dorsal spinal inhibitory interneurons is strongly implicated in the mechanisms…

Neurons and Cognition · Quantitative Biology 2019-02-19 Anna M. Hagenston , Sara Ben Ayed , Hilmar Bading

The mechanisms underlying cardiac fibrillation have been investigated for over a century, but we are still finding surprising results that change our view of this phenomenon. The present study focuses on the transition from normal rhythm to…

Tissues and Organs · Quantitative Biology 2024-11-15 Alejandro Garzón , Roman O. Grigoriev

We analyze a biophysical model of a neuron from the entorhinal cortex that includes persistent sodium and slow potassium as non-standard currents using reduction of dimension and dynamical systems techniques to determine the mechanisms for…

Dynamical Systems · Mathematics 2008-04-08 Jozsi Jalics , Martin Krupa , Horacio G. Rotstein

Multimode cavity optomechanics, where multiple mechanical degrees of freedom couple to optical cavity modes, provides a rich platform for exploring nonlinear dynamics and engineering complex interactions. In this work, we investigate the…

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