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By resorting to the thick-chain model we discuss how the stretching response of a polymer is influenced by the self-avoidance entailed by its finite thickness. The characterization of the force versus extension curve for a thick chain is…

Soft Condensed Matter · Physics 2009-11-11 Ngo Minh Toan , Cristian Micheletti

We study the control parameters that govern the dynamics of in vitro DNA ejection in bacteriophage lambda. Past work has demonstrated that bacteriophage DNA is highly pressurized; this pressure has been hypothesized to help drive DNA…

Biomolecules · Quantitative Biology 2015-05-18 David Wu , David Van Valen , Qicong Hu , Rob Phillips

For $\beta$-$\mathrm{Ga_2O_3}$ only little information exist concerning the thermal properties, especially the thermal conductivity $\lambda$. Here, the thermal conductivity is measured by applying the electrical 3$\omega$-method on…

Materials Science · Physics 2015-02-10 Martin Handwerg , Rüdiger Mitdank , Zbigniew Galazka , Saskia F. Fischer

We probe the electrostatic cost associated with the approach phase of DNA translocation events. Within an analytical theory at the Debye-Huckel level, we calculate the electrostatic free energy of a rigid DNA molecule interacting with a…

Soft Condensed Matter · Physics 2016-03-23 Sahin Buyukdagli , T. Ala-Nissila

Battery electrode surfaces are generally coated with electronically insulating solid films of thickness 1-50 nm. Both electrons and Li+ can move at the electrode-surface film interface in response to the voltage, which adds complexity to…

Materials Science · Physics 2015-07-10 Kevin Leung , Andrew Leenheer

Simulations on a Lennard-Jones computer glass are performed to study effects arising from defects in glasses at low temperatures. The numerical analysis reveals that already a low concentration of defects may dramatically change the low…

Statistical Mechanics · Physics 2009-10-30 Andreas Heuer , Peter Neu

We show that, under certain conditions, the low temperature behavior of the magnetic penetration depth $\lambda(T)$ of a pure d-wave superconductor is determined by nonlocal electrodynamics and, contrary to the general belief, the deviation…

Superconductivity · Physics 2009-10-30 Ioan Kosztin , Anthony J. Leggett

We investigate the coherent transport properties of a DNA chain on a substrate which is subjected to a uniform electric field perpendicular to the surface. On the basis of the effective tight-binding model which simulates charge transport…

Mesoscale and Nanoscale Physics · Physics 2015-06-29 Zhi-Jie Qin , Le Wang , Gui-Ping Zhang

The combination of self-assembly and electronic properties as well as its true nanoscale dimensions make DNA a promising candidate for a building block of single molecule electronics. We argue that the intrinsic double helix conformation of…

Materials Science · Physics 2007-05-23 A. V. Malyshev

We quantified the Manning free (uncondensed) counterions fraction $\theta$ for dilute solutions of rod-like polyions - 150bp DNA fragments, in very low salt $<0.05$mM. Conductivity measurements of aqueous DNA solutions in the concentration…

Dynamics of the polymorphic A<->B transitions in DNA is compared for two polypurine sequences, poly(dA).poly(dT) and poly(dG).poly(dC), long known to exhibit contrasting properties in experiments. In free molecular dynamics simulations…

Biomolecules · Quantitative Biology 2007-05-23 Alexey K. Mazur

We provide a theoretical estimate of the thermoelectric current and voltage over a Phenyldithiol molecule. We also show that the thermoelectric voltage is (1) easy to analyze, (2) insensitive to the detailed coupling to the contacts, (3)…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 M. Paulsson , S. Datta

We propose two-terminal devices for DNA sequencing which consist of a metallic graphene nanoribbon with zigzag edges (ZGNR) and a nanopore in its interior through which the DNA molecule is translocated. Using the nonequilibrium Green…

Mesoscale and Nanoscale Physics · Physics 2012-01-26 Kamal K. Saha , Marija Drndic , Branislav K. Nikolic

The London penetration depth $\lambda(T)$ has been measured in single crystals of Ba(Fe$_{1-x}$Co$_{x}$)$_{2}$As$_{2}$ using the tunnel diode resonator technique. The measured doping levels of $x=$~0.038, 0.047, 0.058, 0.074 and 0.10 range…

Within a simple elastic theory, we study the elongation versus force characteristics of a supercoiled DNA molecule at thermal equilibrium in the regime of small supercoiling. The partition function is mapped to the path integral…

Soft Condensed Matter · Physics 2016-08-31 C. Bouchiat , M. Mezard

Recent electronic transport experiments using metallic contacts attached to proteins identified some 'stylized facts' which contradict conventional wisdom that increasing either the spatial distance between the electrodes or the temperature…

Disordered Systems and Neural Networks · Physics 2019-09-04 Eszter Papp , Dávid P. Jelenfi , Máté T. Veszeli , Gábor Vattay

We propose a phonon-assisted tunnelling model for explanation of conductivity dependence on temperature and temperature-dependent I-V characteristics in deoxyribonucleic acid (DNA) molecules. The capability of this model for explanation of…

Soft Condensed Matter · Physics 2008-05-13 Povilas Pipinys , Antanas Kiveris

The proper design of DNA sequences allows for the formation of well defined supramolecular units with controlled interactions via a consecution of self-assembling processes. Here, we benefit from the controlled DNA self-assembly to…

Soft Condensed Matter · Physics 2018-02-14 Javier Fernandez-Castanon , Francesca Bomboi , Francesco Sciortino

We have adsorbed plasmid PuC19 DNA on a supported bilayer. The mobility of the lipids within the bilayer ensured a 2D equilibrium of the DNA molecule. By varying the fraction of cationic lipids in the membrane, we have tuned the surface…

Biological Physics · Physics 2012-05-16 Tatiana Schmatko , Pierre Muller , Mounir Maaloum

A strict method is used to calculate the current-voltage characteristics of a double-stranded DNA. A more reliable model considering the electrostatic potential drop along an individual DNA molecular wire between the contacts is considered…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Weihua Mu , Zhongcan Ou-Yang