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We employ two Tight-Binding (TB) approaches to study the electronic structure and hole or electron transfer in B-DNA monomer polymers and dimer polymers made up of $N$ monomers (base pairs): (I) at the base-pair level, using the on-site…

We study phase behaviours of lipid--bilayer vesicles functionalised by ligand--receptor complexes made of synthetic DNA by introducing a modelling framework and a dedicated experimental platform. In particular, we perform Monte Carlo…

Soft Condensed Matter · Physics 2016-08-23 S. J. Bachmann , J. Kotar , L. Parolini , A. Šarić , P. Cicuta , L. Di Michele , B. M. Mognetti

Microtubules are hollow cylindrical polymers composed of the highly negatively-charged (~23e), high dipole moment (1750 D) protein a,b-tubulin. While the roles of microtubules in chromosomal segregation, macromolecular transport and cell…

The transfer of electrons and holes along DNA dimers, trimers and polymers is described at the base-pair level, using the relevant on-site energies of the base-pairs and the hopping parameters between successive base-pairs. The temporal and…

Biological Physics · Physics 2014-07-01 Constantinos Simserides

The chiral nature of DNA plays a crucial role in cellular processes. Here we use magnetic tweezers to explore one of the signatures of this chirality, the coupling between stretch and twist deformations. We show that the extension of a…

Biomolecules · Quantitative Biology 2009-09-29 Timothee Lionnet , Sylvain Joubaud , Richard Lavery , David Bensimon , Vincent Croquette

Upon insertion and extraction of lithium, materials important for electrochemical energy storage can undergo changes in thermal conductivity (${\Lambda}$) and elastic modulus ($\it M$). These changes are attributed to evolution of the…

Applied Physics · Physics 2022-01-10 Jungwoo Shin , Sanghyeon Kim , Hoonkee Park , Ho Won Jang , David G. Cahill , Paul V. Braun

Correlation length exponent $\nu$ for long linear DNA molecules was determined by direct measurement of the average end-to-end distance as a function of the contour length $s$ by means of atomic force microscopy (AFM). Linear DNA, up to…

Soft Condensed Matter · Physics 2009-11-11 Francesco Valle , Melanie Favre , Paolo De Los Rios , Angelo Rosa , Giovanni Dietler

We present a set of experiments to optimize the performance of the noninvasive thermometer based on proximity superconductivity. Current through a standard tunnel junction between an aluminum superconductor and a copper electrode is…

Mesoscale and Nanoscale Physics · Physics 2020-05-06 Bayan Karimi , Danilo Nikolic , Tuomas Tuukkanen , Joonas T. Peltonen , Wolfgang Belzig , Jukka P. Pekola

We call {\it monomer} a B-DNA base-pair and examine, analytically and numerically, electron or hole oscillations in monomer- and dimer-polymers, i.e., periodic sequences with repetition unit made of one or two monomers. We employ a…

We separate double stranded lambda phage DNA by applying a fixed force at a constant temperature ranging from 15C to 50C, and measure the minimum force required to separate the two strands, providing the first experimental determination of…

Soft Condensed Matter · Physics 2009-11-10 C. Danilowicz , Y. Kafri , R. S. Conroy , V. W. Coljee , J. Weeks , M. Prentiss

Double-stranded DNA (dsDNA) has been established as an efficient medium for charge migration, bringing it to the forefront of the field of molecular electronics as well as biological research. The charge migration rate is controlled by the…

Soft Condensed Matter · Physics 2020-11-25 Abhishek Aggarwal , Vinayak , Saientan Bag , Chiranjib Bhattacharyya , Umesh V. Waghmare , Prabal K Maiti

A graphene channel field-effect biosensor is demonstrated for detecting the binding of double-stranded DNA and poly-l-lysine. Sensors consist of CVD graphene transferred using a clean, etchant-free transfer method. The presence of DNA and…

Mesoscale and Nanoscale Physics · Physics 2016-01-07 Aniket Kakatkar , T. S. Abhilash , Roberto De Alba , Jeevak M Parpia , Harold G Craighead

The electrical conduction properties of G4-DNA are investigated using a hybrid approach, which combines electronic structure calculations, molecular dynamics (MD) simulations, and the formulation of an effective tight-binding model…

We have considered as a theoretical possibility for the development of a nanobiochip the operation principle of which is based on measuring conductance in single-stranded and double-stranded DNA. Calculations have demonstrated that in the…

Biological Physics · Physics 2013-04-16 V. D. Lakhno , V. B. Sultanov

To study the elastic properties of rod-like DNA nanostructures, we perform long simulations of these structure using the oxDNA coarse-grained model. By analysing the fluctuations in these trajectories we obtain estimates of the bend and…

A method of electronic conductivity measurement is presented. It combines two well known methods of electrochemistry: cyclic voltammetry and chronoamperometry. This DC technique uses the Hebb/Wagner approach to block ionic conduction when…

Systems and Control · Electrical Eng. & Systems 2024-10-01 Veyis Gunes , Jean-Yves Botquelen , Odile Bohnke

Superconductivity in the topological non-trivial Dirac semimetal PdTe$_2$ was recently shown to be type-I. We here report measurements of the relative magnetic penetration depth, $ \Delta \lambda$, on several single crystals using a high…

Superconductivity · Physics 2018-12-05 M. V. Salis , P. Rodière , H. Leng , Y. K. Huang , A. de Visser

The effects of ionic ordering in DNA water solutions are studied by conductivity experiments. The conductivity measurements are performed for the solutions of DNA with KCl salt in the temperature range from 28 to 70 C. Salt concentration…

Biomolecules · Quantitative Biology 2014-01-06 O. O. Liubysh , O. M. Alekseev , S. Yu. Tkachov , S. M. Perepelytsya

DNA has a well-defined structural transition -- the denaturation of its double-stranded form into two single strands -- that strongly affects its thermal transport properties. We show that, according to a widely implemented model for DNA…

Soft Condensed Matter · Physics 2013-02-12 Chih-Chun Chien , Kirill A. Velizhanin , Yonatan Dubi , Michael Zwolak

Lasers based on biological materials are attracting an increasing interest in view of their use in integrated and transient photonics. DNA as optical biopolymer in combination with highly-emissive dyes has been reported to have excellent…