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Agent-based models have been employed to describe numerous processes in immunology. Simulations based on these types of models have been used to enhance our understanding of immunology and disease pathology. We review various agent-based…

Cell Behavior · Quantitative Biology 2017-12-05 Amy L. Bauer , Catherine A. A. Beauchemin , Alan S. Perelson

The Dendritic Cell Algorithm (DCA) is inspired by the function of the dendritic cells of the human immune system. In nature, dendritic cells are the intrusion detection agents of the human body, policing the tissue and organs for potential…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin , Steve Cayzer

A key challenge in systems biology is the elucidation of the underlying principles, or fundamental laws, which determine the cellular phenotype. Understanding how these fundamental principles are altered in diseases like cancer is important…

Molecular Networks · Quantitative Biology 2014-08-06 Andrew Teschendorff , Peter Sollich , Reimer Kuehn

Anomaly detection is the task of detecting data which differs from the normal behaviour of a system in a given context. In order to approach this problem, data-driven models can be learned to predict current or future observations.…

Machine Learning · Computer Science 2020-10-30 Benedikt Eiteneuer , Oliver Niggemann

Security in computer networks is one of the most interesting aspects of computer systems. It is typically represented by the initials CIA: confidentiality, integrity, and authentication or availability. Although, many access levels for data…

Networking and Internet Architecture · Computer Science 2015-11-02 Jaderian Morteza , Moradzadeh Hossein , Madadipouya Kasra , Firoozinia Mohammad , Shamshirband Shahaboddin

Anomaly detection is concerned with identifying data patterns that deviate remarkably from the expected behaviour. This is an important research problem, due to its broad set of application domains, from data analysis to e-health,…

Machine Learning · Computer Science 2021-08-23 L. Erhan , M. Ndubuaku , M. Di Mauro , W. Song , M. Chen , G. Fortino , O. Bagdasar , A. Liotta

Network Intrusion Detection Systems (NIDS) are computer systems which monitor a network with the aim of discerning malicious from benign activity on that network. While a wide range of approaches have met varying levels of success, most…

Artificial Intelligence · Computer Science 2010-07-05 Gianni Tedesco , Uwe Aickelin

The detection of anomalies in unknown environments is a problem that has been approached from different perspectives with variable results. Artificial Immune Systems (AIS) present particularly advantageous characteristics for the detection…

Cryptography and Security · Computer Science 2021-09-14 Pedro Pinacho-Davidson , Matías Lermanda , Ricardo Contreras , María A. Pinninghoff

The innate immune system, acting as the first line of host defense, senses and adapts to foreign challenges through complex intracellular and intercellular signaling networks. Endotoxin tolerance and priming elicited by macrophages are…

Molecular Networks · Quantitative Biology 2017-08-23 Yan Fu , Trevor Glaros , Meng Zhu , Ping Wang , Zhanghan Wu , John J Tyson , Liwu Li , Jianhua Xing

Many biological networks have to filter out useful information from a vast excess of spurious interactions. We use computational evolution to predict design features of networks processing ligand categorization. The important problem of…

Molecular Networks · Quantitative Biology 2013-05-27 Jean-Benoît Lalanne , Paul François

The increasing interest in understanding the behavior of the biological neural networks, and the increasing utilization of artificial neural networks in different fields and scales, both require a thorough understanding of how neuromorphic…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-12 János Végh , Ádám J. Berki

Cells process external and internal signals through chemical interactions. Cells that constitute the immune system (e.g., antigen presenting cell, T-cell, B-cell, mast cell) can have different functions (e.g., adaptive memory, inflammatory…

Molecular Networks · Quantitative Biology 2017-09-21 John A. P. Sekar , James R. Faeder

Testing and code reviews are known techniques to improve the quality and robustness of software. Unfortunately, the complexity of modern software systems makes it impossible to anticipate all possible problems that can occur at runtime,…

Software Engineering · Computer Science 2021-01-08 Moeen Ali Naqvi , Merve Astekin , Sehrish Malik , Leon Moonen

Network Intrusion Detection Systems (NDIS) monitor a network with the aim of discerning malicious from benign activity on that network. While a wide range of approaches have met varying levels of success, most IDS's rely on having access to…

Artificial Intelligence · Computer Science 2010-07-05 Gianni Tedesco , Jamie Twycross , Uwe Aickelin

The immune system is a complex biological system with a highly distributed, adaptive and self-organising nature. This paper presents an Artificial Immune System (AIS) that exploits some of these characteristics and is applied to the task of…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Steve Cayzer , Uwe Aickelin

Immunology is the emerging research area which deals with the study of the immune system in any living organism. It is modelled through various computational and mathematical models to deal with the problem facing while to boost the immune…

Cell Behavior · Quantitative Biology 2019-06-21 Gajendra Pratap Singh , Madhuri Jha

Accurate immunological models offer the possibility of performing highthroughput experiments in silico that can predict, or at least suggest, in vivo phenomena. In this chapter, we compare various models of immunological memory. We first…

Artificial Intelligence · Computer Science 2010-07-05 Simon Garret , Martin Robbins , Joanne Walker , William Wilson , Uwe Aickelin

The immune system is a complex biological system with a highly distributed, adaptive and self-organising nature. This paper presents an artificial immune system (AIS) that exploits some of these characteristics and is applied to the task of…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Steve Cazyer , Uwe Aickelin

Complex mathematical models of interaction networks are routinely used for prediction in systems biology. However, it is difficult to reconcile network complexities with a formal understanding of their behavior. Here, we propose a simple…

Biological Physics · Physics 2017-11-22 Félix Proulx-Giraldeau , Thomas J. Rademaker , Paul François

An adaptive agent predicting the future state of an environment must weigh trust in new observations against prior experiences. In this light, we propose a view of the adaptive immune system as a dynamic Bayesian machinery that updates its…

Populations and Evolution · Quantitative Biology 2019-05-14 Andreas Mayer , Vijay Balasubramanian , Aleksandra M. Walczak , Thierry Mora