Related papers: Approximating Ropelength by Energy Functions
We study a maximization problem for geometric network design. Given a set of $n$ compact neighborhoods in $\mathbb{R}^d$, select a point in each neighborhood, so that the longest spanning tree on these points (as vertices) has maximum…
We study the interplay between entropy and topological constraints for a polymer chain in which sliding rings (slip-links) enforce pair contacts between monomers. These slip-links divide a closed ring polymer into a number of sub-loops…
The (isothermic) compressibility of lattice knots can be examined as a model of the effects of topology and geometry on the compressibility of ring polymers. In this paper, the compressibility of minimal length lattice knots in the simple…
To a special type of grope embedded in 4-space, that we call an admissible grope, we associate a length function for each real number q at least 1. This gives rise to a family of pseudo-metrics d^q, refining the slice genus metric, on the…
We point out the connection between mathematical knot theory and spin glass/search problem. In particular, we present a statistical mechanical formulation of the problem of computing a knot invariant; p-colorability problem, which provides…
We introduce tensor network contraction algorithms for the evaluation of the Jones polynomial of arbitrary knots. The value of the Jones polynomial of a knot maps to the partition function of a $q$-state Potts model defined as a planar…
Axons are linear processes of nerve cells that can range from a few tens of micrometers up to meters in length. In addition to external cues, the length of an axon is also regulated by unknown internal mechanisms. Molecular motors have been…
We discuss the polynomial representation for long knots and elaborate on how to obtain them with a bound on degrees of the defining polynomials, for any knot-type.
The theory of tunnel number 1 knots detailed in our previous paper, The tree of knot tunnels, provides a non-negative integer invariant called the depth of the tunnel. We give various results related to the depth invariant. Noting that it…
We quantify a social organization's potentiality, that is its ability to attain different configurations. The organization is represented as a network in which nodes correspond to individuals and (multi-)edges to their multiple…
A veritable zoo of different knots is seen in the ensemble of looped polymer chains, whether created computationally or observed in vitro. At short loop lengths, the spectrum of knots is dominated by the trivial knot (unknot). The…
A ribbon is, intuitively, a smooth mapping of an annulus $S^1 \times I$ in 3-space having constant width $\varepsilon$. This can be formalized as a triple $(x,\varepsilon, \mathbf{u})$ where $x$ is smooth curve in 3-space and $\mathbf{u}$…
We investigate the Rouse dynamics of a flexible ring polymer with a prime knot. Within a Monte Carlo approach, we locate the knot, follow its diffusion, and observe the fluctuations of its length. We characterise a topological time scale,…
Networks are useful for describing systems of interacting objects, where the nodes represent the objects and the edges represent the interactions between them. The applications include chemical and metabolic systems, food webs as well as…
A grid poset -- or grid for short -- is a product of chains. We ask, what does a random linear extension of a grid look like? In particular, we show that the average "jump number," i.e., the number of times that two consecutive elements in…
An electrical network with the structure of a random tree is considered: starting from a root vertex, in one iteration each leaf (a vertex with zero or one adjacent edges) of the tree is extended by either a single edge with probability $p$…
The warping sum $e(K)$ of a knot $K$ is the minimal value of the sum of the warping degrees of a minimal diagram of $K$ with both orientations. In this paper, knots $K$ with $e(K) \le 3$ are characterized, and some knots $K$ with $e(K)=4$…
We describe a procedure that creates an explicit complex-valued polynomial function of three-dimensional space, whose nodal lines are the three-twist knot $5_2$. The construction generalizes a similar approach for lemniscate knots: a braid…
Consider a homogeneous Poisson point process in a compact convex set in $d$-dimensional Euclidean space which has interior points and contains the origin. The radial spanning tree is constructed by connecting each point of the Poisson point…
We provide bounds for the product of the lengths of distinguished shortest paths in a finite network induced by a triangulation of a topological planar quadrilateral.