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We study the effects of intrinsic sequence-dependent curvature for a two dimensional semiflexible biopolymer with short-range correlation in intrinsic curvatures. We show exactly that when not subjected to any external force, such a system…

Soft Condensed Matter · Physics 2015-05-14 Zicong Zhou , Bela Joos

We study the dynamics of a particle in a one-dimensional Gaussian random potential with logarithmic correlations. It was shown in previous studies that the model exhibits a dynamical transition between two subdiffusive phases. We…

Statistical Mechanics · Physics 2018-05-17 Masahiko Ueda

In this work a new strategy is proposed in order to build analytic and microscopic models of fluctuating polymer rings subjected to topological constraints. The topological invariants used to fix these constraints belong to a wide class of…

Statistical Mechanics · Physics 2020-01-08 Franco Ferrari

Modeling of polymer chains has received a lot of attention in mathematics. In fact, probabilistic models that naturally arise in statistical mechanics have been widely studied by mathematicians for the very challenging and novel problems…

Probability · Mathematics 2007-05-23 Francesco Caravenna

We investigate the chain conformation of ring polymers confined to a cylindrical nanochannel using both theoretical analysis and three dimensional Langevin dynamics simulations. We predict that the longitudinal size of a ring polymer scales…

Soft Condensed Matter · Physics 2012-12-06 Junfang Sheng , Kaifu Luo

Theoretical results for the extension of a polymer confined to a channel are usually derived in the limit of infinite contour length. But experimental studies and simulations of DNA molecules confined to nanochannels are not necessarily in…

Soft Condensed Matter · Physics 2015-12-23 T. St Clere Smithe , V. Iarko , A. Muralidhar , E. Werner , K. D. Dorfman , B. Mehlig

We reconsider Ising spins in a Gaussian random field within the replica formalism. The corresponding continuum model involves several coupling constants beyond the single one which was considered in the standard $\phi^4$ theory approach.…

Condensed Matter · Physics 2009-10-31 E. Brézin , C. De Dominicis

We analyze the crystallization and collapse transition of a simple model for flexible polymer chains on simple cubic and face-centered cubic lattices by means of sophisticated chain-growth methods. In contrast to bond-fluctuation polymer…

Soft Condensed Matter · Physics 2009-11-13 Thomas Vogel , Michael Bachmann , Wolfhard Janke

Self-avoiding polymers in strictly two-dimensional ($d=2$) melts are investigated by means of molecular dynamics simulation of a standard bead-spring model with chain lengths ranging up to N=2048. % The chains adopt compact configurations…

Soft Condensed Matter · Physics 2015-05-18 H. Meyer , J. P. Wittmer , T. Kreer , A. Johner , J. Baschnagel

In polymer physics it is typically assumed that excluded volume interactions are effectively screened in polymer melts. Hence, chains could be described by an effective random walk without excluded volume interactions. In this letter, we…

Soft Condensed Matter · Physics 2017-10-31 Hendrik Meyer , Eric Horwath , Peter Virnau

We study an undirected polymer chain living on the 1-dimensional integer lattice and carrying i.i.d.\ random charges. Each self-intersection of the polymer contributes to the Hamiltonian an energy that is equal to the product of the charges…

Probability · Mathematics 2016-03-23 F. Caravenna , F. Den Hollander , N. Pétrélis , J. Poisat

Conformational properties of regular dendrimers and more general hyperbranched polymer stars with Gaussian statistics for the spacer chains between branching points are revisited numerically. We investigate the scaling for asymptotically…

Soft Condensed Matter · Physics 2015-08-18 P. Polinska , C. Gillig , J. P. Wittmer , J. Baschnagel

Conformations of partially or fully adsorbed semiflexible polymer chains are studied varying both contour length $L$, chain stiffness, $\kappa$, and the strength of the adsorption potential over a wide range. Molecular Dynamics simulations…

Soft Condensed Matter · Physics 2019-10-02 Andrey Milchev , Kurt Binder

The freely rotating chain is one of the classic discrete models of a polymer in dilute solution. It consists of a broken line of N straight segments of fixed length such that the angle between adjacent segments is constant and the N-1…

Probability · Mathematics 2017-11-15 Philip Kilanowski , Peter March , Marko Samara

We present a general formalism to make the Replica-Symmetric and Replica-Symmetry-Breaking ansatz in the context of Kikuchi's Cluster Variational Method (CVM). Using replicas and the message-passing formulation of CVM we obtain a…

Disordered Systems and Neural Networks · Physics 2010-05-14 T. Rizzo , A. Lage-Castellanos , R. Mulet , F. Ricci-Tersenghi

We start with a rather detailed, general discussion of recent results of the replica approach to statistical mechanics of a single classical particle placed in a random $N (\gg 1)$-dimensional Gaussian landscape and confined by a…

Disordered Systems and Neural Networks · Physics 2008-01-03 Yan V Fyodorov , Ian Williams

The transport coefficients of dense polymeric fluids are approximately calculated from the microscopic intermolecular forces. The following finite molecular weight effects are discussed within the Polymer-Mode-Coupling theory (PMC) and…

Condensed Matter · Physics 2009-10-30 Matthias Fuchs , Kenneth S. Schweizer

We investigate the Rubinstein-Duke model for polymer reptation by means of density-matrix renormalization group techniques both in absence and presence of a driving field. In the former case the renewal time \tau and the diffusion…

Statistical Mechanics · Physics 2009-11-07 Enrico Carlon , Andrzej Drzewinski , J. M. J. van Leeuwen

We study the expectation value of the logarithm of the partition function of large binary-to-binary lattice-gas Restricted Boltzmann Machines (RBMs) within a replica-symmetric ansatz, averaging over the disorder represented by the…

Disordered Systems and Neural Networks · Physics 2023-01-25 David C. Hoyle

The statistical mechanics of a linear non-interacting polymer chain with a large number of monomers is considered with fixed angular momentum. The radius of gyration for a linear polymer is derived exactly by functional integration. This…

Soft Condensed Matter · Physics 2013-05-29 Matthew Brunner , J. M. Deutsch