English
Related papers

Related papers: ViroBench: Benchmarking Nucleotide Foundation Mode…

200 papers

Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require…

Large language models are emerging as powerful tools for scientific law discovery, a foundational challenge in AI-driven science. However, existing benchmarks for this task suffer from a fundamental methodological trilemma, forcing a…

The advent of foundation models, which are pre-trained on vast datasets, has ushered in a new era of computer vision, characterized by their robustness and remarkable zero-shot generalization capabilities. Mirroring the transformative…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Xu Liu , Tong Zhou , Yuanxin Wang , Yuping Wang , Qinjingwen Cao , Weizhi Du , Yonghuan Yang , Junjun He , Yu Qiao , Yiqing Shen

Models like OpenAI-o3 pioneer visual grounded reasoning by dynamically referencing visual regions, just like human "thinking with images". However, no benchmark exists to evaluate these capabilities holistically. To bridge this gap, we…

Computer Vision and Pattern Recognition · Computer Science 2026-03-06 Haochen Wang , Xiangtai Li , Zilong Huang , Anran Wang , Jiacong Wang , Tao Zhang , Jiani Zheng , Sule Bai , Zijian Kang , Jiashi Feng , Zhuochen Wang , Zhaoxiang Zhang

Evolving software is challenging, even more when it exists in many different variants. Such software evolves not only in time, but also in space--another dimension of complexity. While evolution in space is supported by a variety of…

Software Engineering · Computer Science 2021-12-03 Christoph Derks , Daniel Strüber , Thorsten Berger

In hematology, computational models offer significant potential to improve diagnostic accuracy, streamline workflows, and reduce the tedious work of analyzing single cells in peripheral blood or bone marrow smears. However, clinical…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Valentin Koch , Sophia J. Wagner , Salome Kazeminia , Ece Sancar , Matthias Hehr , Julia Schnabel , Tingying Peng , Carsten Marr

Large language models are now integrated into many scientific workflows, accelerating data analysis, hypothesis generation, and design space exploration. In parallel with this growth, there is a growing need to carefully evaluate whether…

The automatic generation of deep learning (DL) kernels using large language models (LLMs) has emerged as a promising approach to reduce the manual effort and hardware-specific expertise required for writing high-performance operator…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-29 Zhongzhen Wen , Yinghui Zhang , Zhong Li , Zhongxin Liu , Linna Xie , Tian Zhang

With the rapid advances of powerful multimodal models such as GPT-4o, Nano Banana, and Seedream 4.0 in Image Editing, the performance gap between closed-source and open-source models is widening, primarily due to the scarcity of…

Computer Vision and Pattern Recognition · Computer Science 2025-12-03 Keming Ye , Zhipeng Huang , Canmiao Fu , Qingyang Liu , Jiani Cai , Zheqi Lv , Chen Li , Jing Lyu , Zhou Zhao , Shengyu Zhang

Accurate parsing of citations is necessary for machine-readable scholarly infrastructure. But, despite sustained interest in this problem, existing evaluation techniques are often not generalizable, based on synthetic data, or not publicly…

Digital Libraries · Computer Science 2026-03-27 Parth Sarin , Juan Pablo Alperin , Adam Buttrick , Dione Mentis

Frontier artificial intelligence (AI) models, such as OpenAI's GPT-5 and Meta's DINOv3, have advanced rapidly through training on internet-scale public data, yet such systems lack access to private clinical data. Neuroimaging, in…

Geometric problem solving constitutes a critical branch of mathematical reasoning, requiring precise analysis of shapes and spatial relationships. Current evaluations of geometric reasoning in vision-language models (VLMs) face limitations,…

Computer Vision and Pattern Recognition · Computer Science 2026-01-01 Yuan Feng , Yue Yang , Xiaohan He , Jiatong Zhao , Jianlong Chen , Zijun Chen , Daocheng Fu , Qi Liu , Renqiu Xia , Bo Zhang , Junchi Yan

Proteins perform critical processes in all living systems: converting solar energy into chemical energy, replicating DNA, as the basis of highly performant materials, sensing and much more. While an incredible range of functionality has…

Biomolecules · Quantitative Biology 2021-09-29 Leonardo V. Castorina , Rokas Petrenas , Kartic Subr , Christopher W. Wood

Foundation models (FMs), large neural networks pretrained on extensive and diverse datasets, have revolutionized artificial intelligence and shown significant promise in medical imaging by enabling robust performance with limited labeled…

Image and Video Processing · Electrical Eng. & Systems 2025-06-17 Salah Ghamizi , Georgia Kanli , Yu Deng , Magali Perquin , Olivier Keunen

Large Language Models (LLMs) have made significant strides in front-end code generation. However, existing benchmarks exhibit several critical limitations: many tasks are overly simplistic, test cases often lack rigor, and end-to-end…

Software Engineering · Computer Science 2025-06-19 Hongda Zhu , Yiwen Zhang , Bing Zhao , Jingzhe Ding , Siyao Liu , Tong Liu , Dandan Wang , Yanan Liu , Zhaojian Li

Recent progress in self-supervision has shown that pre-training large neural networks on vast amounts of unsupervised data can lead to substantial increases in generalization to downstream tasks. Such models, recently coined foundation…

Vision-language models (VLMs) exhibit strong zero-shot generalization on natural images and show early promise in interpretable medical image analysis. However, existing benchmarks do not systematically evaluate whether these models truly…

Computer Vision and Pattern Recognition · Computer Science 2025-06-02 Tianhong Zhou , Yin Xu , Yingtao Zhu , Chuxi Xiao , Haiyang Bian , Lei Wei , Xuegong Zhang

The rise of vision foundation models (VFMs) calls for systematic evaluation. A common approach pairs VFMs with large language models (LLMs) as general-purpose heads, followed by evaluation on broad Visual Question Answering (VQA)…

Computer Vision and Pattern Recognition · Computer Science 2026-05-05 Zheda Mai , Arpita Chowdhury , Zihe Wang , Sooyoung Jeon , Lemeng Wang , Jiacheng Hou , Jihyung Kil , Wei-Lun Chao

As LLM-based agents are increasingly deployed in real-life scenarios, existing benchmarks fail to capture their inherent complexity of handling extensive information, leveraging diverse resources, and managing dynamic user interactions. To…

Computation and Language · Computer Science 2025-10-20 Wei He , Yueqing Sun , Hongyan Hao , Xueyuan Hao , Zhikang Xia , Qi Gu , Chengcheng Han , Dengchang Zhao , Hui Su , Kefeng Zhang , Man Gao , Xi Su , Xiaodong Cai , Xunliang Cai , Yu Yang , Yunke Zhao

A critical yet frequently overlooked challenge in the field of deepfake detection is the lack of a standardized, unified, comprehensive benchmark. This issue leads to unfair performance comparisons and potentially misleading results.…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Zhiyuan Yan , Yong Zhang , Xinhang Yuan , Siwei Lyu , Baoyuan Wu