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The increase of available large clinical and experimental datasets has contributed to a substantial amount of important contributions in the area of biomedical image analysis. Image segmentation, which is crucial for any quantitative…

Computer Vision and Pattern Recognition · Computer Science 2022-03-29 Nikhil Kumar Tomar , Debesh Jha , Michael A. Riegler , Håvard D. Johansen , Dag Johansen , Jens Rittscher , Pål Halvorsen , Sharib Ali

Unified multimodal models integrate the reasoning capacity of large language models with both image understanding and generation, showing great promise for advanced multimodal intelligence. However, the community still lacks a rigorous…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Hongxiang Li , Yaowei Li , Bin Lin , Yuwei Niu , Yuhang Yang , Xiaoshuang Huang , Jiayin Cai , Xiaolong Jiang , Yao Hu , Long Chen

Code generation has emerged as one of AI's highest-impact use cases, yet existing benchmarks measure isolated tasks rather than the complete "zero-to-one" process of building a working application from scratch. We introduce Vibe Code Bench,…

Software Engineering · Computer Science 2026-05-15 Hung Tran , Langston Nashold , Rayan Krishnan , Antoine Bigeard , Alex Gu

We study the task of automatically finding evidence relevant to hypotheses in biomedical papers. Finding relevant evidence is an important step when researchers investigate scientific hypotheses. We introduce EvidenceBench to measure models…

Recent benchmarks for medical Large Vision-Language Models (LVLMs) emphasize leaderboard accuracy, overlooking reliability and safety. We study sycophancy -- models' tendency to uncritically echo user-provided information -- in high-stakes…

Computer Vision and Pattern Recognition · Computer Science 2025-09-25 Botai Yuan , Yutian Zhou , Yingjie Wang , Fushuo Huo , Yongcheng Jing , Li Shen , Ying Wei , Zhiqi Shen , Ziwei Liu , Tianwei Zhang , Jie Yang , Dacheng Tao

Recent advances in clinical AI have enabled remarkable progress across many clinical domains. However, existing benchmarks and models are primarily limited to a small set of modalities and tasks, which hinders the development of large-scale…

Machine Learning · Computer Science 2025-03-21 Wei Dai , Peilin Chen , Malinda Lu , Daniel Li , Haowen Wei , Hejie Cui , Paul Pu Liang

Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works have largely hinged…

Genomics · Quantitative Biology 2024-03-20 Zhihan Zhou , Yanrong Ji , Weijian Li , Pratik Dutta , Ramana Davuluri , Han Liu

Vision-Language Models (VLMs) have demonstrated remarkable capabilities in cross-modal understanding and generation by integrating visual and textual information. While instruction tuning and parameter-efficient fine-tuning methods have…

Machine Learning · Computer Science 2025-06-12 Weiying Zheng , Ziyue Lin , Pengxin Guo , Yuyin Zhou , Feifei Wang , Liangqiong Qu

The application of deep learning methods, particularly foundation models, in biological research has surged in recent years. These models can be text-based or trained on underlying biological data, especially omics data of various types.…

Artificial Intelligence · Computer Science 2024-12-06 Yoav Kan-Tor , Michael Morris Danziger , Eden Zohar , Matan Ninio , Yishai Shimoni

Vision-Language Models (VLMs) are increasingly pivotal for generalist robot manipulation, enabling tasks such as physical reasoning, policy generation, and failure detection. However, their proficiency in these high-level applications often…

Robotics · Computer Science 2025-07-01 Atharva Gundawar , Som Sagar , Ransalu Senanayake

Time series anomaly detection is a vital task in many domains, including patient monitoring in healthcare, forecasting in finance, and predictive maintenance in energy industries. This has led to a proliferation of anomaly detection…

Machine Learning · Computer Science 2024-11-26 Sarah Alnegheimish , Laure Berti-Equille , Kalyan Veeramachaneni

The integration of Artificial Intelligence (AI), especially Large Language Models (LLMs), into the clinical diagnosis process offers significant potential to improve the efficiency and accessibility of medical care. While LLMs have shown…

Computation and Language · Computer Science 2024-10-15 Mingyu Derek Ma , Chenchen Ye , Yu Yan , Xiaoxuan Wang , Peipei Ping , Timothy S Chang , Wei Wang

Benchmarks for coding agents increasingly measure source-level software repair, and cybersecurity benchmarks increasingly measure broad capture-the-flag performance. Classical binary reverse engineering remains less precisely specified:…

Software Engineering · Computer Science 2026-05-12 Isaac David , Arthur Gervais

While traditional tree-based ensemble methods have long dominated tabular tasks, deep neural networks and emerging foundation models have challenged this primacy, yet no consensus exists on a universally superior paradigm. Existing…

Bioinformatics has witnessed a paradigm shift with the increasing integration of artificial intelligence (AI), particularly through the adoption of foundation models (FMs). These AI techniques have rapidly advanced, addressing historical…

Quantitative Methods · Quantitative Biology 2024-02-08 Qing Li , Zhihang Hu , Yixuan Wang , Lei Li , Yimin Fan , Irwin King , Le Song , Yu Li

The rapid advancement of large language models (LLMs) has accelerated their integration into clinical decision support, particularly in prescription review. To enable systematic and fine-grained evaluation, we developed RxBench, a…

Computation and Language · Computer Science 2025-12-03 Yan Yang , Mouxiao Bian , Peiling Li , Bingjian Wen , Ruiyao Chen , Kangkun Mao , Xiaojun Ye , Tianbin Li , Pengcheng Chen , Bing Han , Jie Xu , Kaifeng Qiu , Junyan Wu

The deployment of Large Language Models (LLMs) in high-stakes clinical settings demands rigorous and reliable evaluation. However, existing medical benchmarks remain static, suffering from two critical limitations: (1) data contamination,…

Artificial Intelligence · Computer Science 2026-02-12 Zhiling Yan , Dingjie Song , Zhe Fang , Yisheng Ji , Xiang Li , Quanzheng Li , Lichao Sun

Quantum kernel methods have been proposed as a promising approach for leveraging near-term quantum computers for supervised learning, yet rigorous benchmarks against strong classical baselines remain scarce. We present a comprehensive…

Quantum Physics · Physics 2026-04-22 Siavash Kakavand , Christoph Strohmeyer , Michael Schlotter

Recent advances in probabilistic modelling have led to a large number of simulation-based inference algorithms which do not require numerical evaluation of likelihoods. However, a public benchmark with appropriate performance metrics for…

Machine Learning · Statistics 2021-04-12 Jan-Matthis Lueckmann , Jan Boelts , David S. Greenberg , Pedro J. Gonçalves , Jakob H. Macke

Learning from noisy labels remains a major challenge in medical image analysis, where annotation demands expert knowledge and substantial inter-observer variability often leads to inconsistent or erroneous labels. Despite extensive research…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Yuan Ma , Junlin Hou , Chao Zhang , Yukun Zhou , Zongyuan Ge , Haoran Xie , Lie Ju
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