English
Related papers

Related papers: GenomeQA: Benchmarking General Large Language Mode…

200 papers

Large language models (LLMs) are increasingly applied to cybersecurity question answering (QA) for critical tasks such as incident response and vulnerability analysis. However, real-world operational contexts, including system logs and…

Cryptography and Security · Computer Science 2026-05-26 Matilda Gaddi , Jin Noh , Onat Gungor , Tajana Rosing

A deep understanding of sports, a field rich in strategic and dynamic content, is crucial for advancing Natural Language Processing (NLP). This holds particular significance in the context of evaluating and advancing Large Language Models…

Computation and Language · Computer Science 2024-06-19 Haotian Xia , Zhengbang Yang , Yuqing Wang , Rhys Tracy , Yun Zhao , Dongdong Huang , Zezhi Chen , Yan Zhu , Yuan-fang Wang , Weining Shen

Scientific Large Language Models (Sci-LLMs) have emerged as a promising frontier for accelerating biological discovery. However, these models face a fundamental challenge when processing raw biomolecular sequences: the tokenization dilemma.…

Large language models (LLMs) are increasingly applied to materials science questions, including literature comprehension, property prediction, materials discovery and alloy design. At the same time, a wide range of physics-based…

Materials Science · Physics 2025-12-17 Siyu Liu , Bo Hu , Beilin Ye , Jiamin Xu , David J. Srolovitz , Tongqi Wen

Large Language Models (LLMs) provide flexible natural language processing capabilities, while knowledge graphs (KGs) offer explicit and structured knowledge. Integrating these two in a complementary manner enables the development of…

Computation and Language · Computer Science 2026-05-12 Shusaku Egami , Aoi Ohta , Tomoki Tsujimura , Masaki Asada , Tatsuya Ishigaki , Ken Fukuda , Masahiro Hamasaki , Hiroya Takamura

In recent years, transformer-based large language models (LLMs) have revolutionised natural language processing (NLP), with generative models opening new possibilities for tasks that require context-aware text generation. Requirements…

Computation and Language · Computer Science 2025-04-24 Waad Alhoshan , Alessio Ferrari , Liping Zhao

While Small Language Models (SLMs) have demonstrated promising performance on an increasingly wide array of commonsense reasoning benchmarks, current evaluation practices rely almost exclusively on the accuracy of their final answers,…

Computation and Language · Computer Science 2026-04-21 Francesco Maria Molfese , Luca Moroni , Ciro Porcaro , Simone Conia , Roberto Navigli

Large language models (LLMs) are approaching expert-level performance in medical question answering (QA), demonstrating strong potential to improve public healthcare. However, underlying biases related to sensitive attributes such as sex…

Artificial Intelligence · Computer Science 2026-01-13 Ying Xiao , Jie Huang , Ruijuan He , Jing Xiao , Mohammad Reza Mousavi , Yepang Liu , Kezhi Li , Zhenpeng Chen , Jie M. Zhang

We present a new approach for benchmarking Large Language Model (LLM) capabilities on research-level mathematics. Existing benchmarks largely rely on static, hand-curated sets of contest or textbook-style problems as proxies for…

Artificial Intelligence · Computer Science 2026-03-02 Antoine Peyronnet , Fabian Gloeckle , Amaury Hayat

Large Language Models (LLMs), while being increasingly dominant on a myriad of knowledge-intensive activities, have only had limited success understanding lengthy table-text mixtures, such as academic papers and financial reports. Recent…

Computation and Language · Computer Science 2024-12-16 Yikang Pan , Yi Zhu , Rand Xie , Yizhi Liu

Instructional documents are rich sources of knowledge for completing various tasks, yet their unique challenges in conversational question answering (CQA) have not been thoroughly explored. Existing benchmarks have primarily focused on…

Computation and Language · Computer Science 2024-10-02 Shiwei Wu , Chen Zhang , Yan Gao , Qimeng Wang , Tong Xu , Yao Hu , Enhong Chen

Large language models (LLMs) are introducing a paradigm shift in molecular discovery by enabling text-guided interaction with chemical spaces through natural language, symbolic notations, with emerging extensions to incorporate multi-modal…

Machine Learning · Computer Science 2025-05-23 Ziqing Wang , Kexin Zhang , Zihan Zhao , Yibo Wen , Abhishek Pandey , Han Liu , Kaize Ding

As generative AI becomes increasingly embedded in everyday workflows, it is important to evaluate its performance in ways that reflect real-world usage rather than abstract notions of intelligence. Unlike many existing benchmarks that…

Artificial Intelligence · Computer Science 2025-05-14 Justin K Miller , Wenjia Tang

Large Language Models (LLMs) are trained on vast amounts of data, most of which is automatically scraped from the internet. This data includes encyclopedic documents that harbor a vast amount of general knowledge (e.g., Wikipedia) but also…

Large Language Models (LLMs) demonstrate remarkable generalizability across diverse tasks, yet genomic foundation models (GFMs) still require separate finetuning for each downstream application, creating significant overhead as model sizes…

Genomics · Quantitative Biology 2025-02-07 Zehui Li , Vallijah Subasri , Yifei Shen , Dongsheng Li , Yiren Zhao , Guy-Bart Stan , Caihua Shan

Large Language Models (LLMs) are commonly used in Question Answering (QA) settings, increasingly in the natural sciences if not science at large. Reliable Uncertainty Quantification (UQ) is critical for the trustworthy uptake of generated…

Computation and Language · Computer Science 2026-02-03 Philip Müller , Nicholas Popovič , Michael Färber , Peter Steinbach

We propose PPLqa, an easy to compute, language independent, information-theoretic metric to measure the quality of responses of generative Large Language Models (LLMs) in an unsupervised way, without requiring ground truth annotations or…

Computation and Language · Computer Science 2024-11-26 Gerald Friedland , Xin Huang , Yueying Cui , Vishaal Kapoor , Ashish Khetan , Sanjiv Das

State-of-the-art large language models (LLMs) have demonstrated impressive code generation capabilities but struggle with real-world software engineering tasks, such as revising source code to address code reviews, hindering their practical…

Software Engineering · Computer Science 2025-06-03 Hong Yi Lin , Chunhua Liu , Haoyu Gao , Patanamon Thongtanunam , Christoph Treude

This paper surveys the development of large language model (LLM)-based agents for question answering (QA). Traditional agents face significant limitations, including substantial data requirements and difficulty in generalizing to new…

Computation and Language · Computer Science 2025-03-26 Murong Yue

Large language models (LLMs) are increasingly being deployed across disciplines due to their advanced reasoning and problem solving capabilities. To measure their effectiveness, various benchmarks have been developed that measure aspects of…