English
Related papers

Related papers: GenomeQA: Benchmarking General Large Language Mode…

200 papers

Large Language Models (LLMs) have revolutionized both general natural language processing and domain-specific applications such as code synthesis, legal reasoning, and finance. However, while prior studies have explored individual model…

Software Engineering · Computer Science 2025-12-05 Gunjan Das , Paheli Bhattacharya , Rishabh Gupta

This paper introduces MedExQA, a novel benchmark in medical question-answering, to evaluate large language models' (LLMs) understanding of medical knowledge through explanations. By constructing datasets across five distinct medical…

Computation and Language · Computer Science 2024-07-04 Yunsoo Kim , Jinge Wu , Yusuf Abdulle , Honghan Wu

Large language models (LLMs) have shown growing promise in biomedical research, particularly for knowledge-driven interpretation tasks. However, their ability to reliably reason from gene-level knowledge to functional understanding, a core…

Genomics · Quantitative Biology 2026-05-25 Xiaohan Huang , Meng Xiao , Chuan Qin , Qingqing Long , Jinmiao Chen , Yuanchun Zhou , Hengshu Zhu

This paper presents MobQA, a benchmark dataset designed to evaluate the semantic understanding capabilities of large language models (LLMs) for human mobility data through natural language question answering. While existing models excel at…

Computation and Language · Computer Science 2025-08-18 Hikaru Asano , Hiroki Ouchi , Akira Kasuga , Ryo Yonetani

Despite recent advances in large language models (LLMs) for materials science, there is a lack of benchmarks for evaluating their domain-specific knowledge and complex reasoning abilities. To bridge this gap, we introduce MSQA, a…

Artificial Intelligence · Computer Science 2025-06-02 Jerry Junyang Cheung , Shiyao Shen , Yuchen Zhuang , Yinghao Li , Rampi Ramprasad , Chao Zhang

Recent advancements in Natural Language Processing and Deep Learning have enabled the development of Large Language Models (LLMs), which have significantly advanced the state-of-the-art across a wide range of tasks, including Question…

Computation and Language · Computer Science 2026-02-20 Charalampos Mastrokostas , Nikolaos Giarelis , Nikos Karacapilidis

The adoption of large language models (LLMs) to assist clinicians has attracted remarkable attention. Existing works mainly adopt the close-ended question-answering (QA) task with answer options for evaluation. However, many clinical…

Research on long non-coding RNAs (lncRNAs) has garnered significant attention due to their critical roles in gene regulation and disease mechanisms. However, the complexity and diversity of lncRNA sequences, along with the limited knowledge…

Genomics · Quantitative Biology 2024-11-07 Wei Wang , Zhichao Hou , Xiaorui Liu , Xinxia Peng

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large…

Genomics · Quantitative Biology 2025-02-28 Shuyan Cheng , Yishu Wei , Yiliang Zhou , Zihan Xu , Drew N Wright , Jinze Liu , Yifan Peng

In this paper, we introduce EconLogicQA, a rigorous benchmark designed to assess the sequential reasoning capabilities of large language models (LLMs) within the intricate realms of economics, business, and supply chain management.…

Computation and Language · Computer Science 2024-09-24 Yinzhu Quan , Zefang Liu

In the rapidly evolving landscape of genomics, deep learning has emerged as a useful tool for tackling complex computational challenges. This review focuses on the transformative role of Large Language Models (LLMs), which are mostly based…

Large Language Models (LLMs) have demonstrated impressive performance in various NLP tasks, but they still suffer from challenges such as hallucination and weak numerical reasoning. To overcome these challenges, external tools can be used…

Computation and Language · Computer Science 2023-06-26 Yuchen Zhuang , Yue Yu , Kuan Wang , Haotian Sun , Chao Zhang

The rapid rise in popularity of Large Language Models (LLMs) with emerging capabilities has spurred public curiosity to evaluate and compare different LLMs, leading many researchers to propose their own LLM benchmarks. Noticing preliminary…

Artificial Intelligence · Computer Science 2025-05-15 Timothy R. McIntosh , Teo Susnjak , Nalin Arachchilage , Tong Liu , Paul Watters , Malka N. Halgamuge

Large language models (LLMs) have made significant strides in code generation, achieving impressive capabilities in synthesizing code snippets from natural language instructions. However, a critical challenge remains in ensuring LLMs…

Computation and Language · Computer Science 2025-12-23 Jian Yang , Wei Zhang , Yizhi Li , Shawn Guo , Haowen Wang , Aishan Liu , Ge Zhang , Zili Wang , Zhoujun Li , Xianglong Liu , Weifeng Lv

Foundation models have revolutionized natural language processing and artificial intelligence, significantly enhancing how machines comprehend and generate human languages. Inspired by the success of these foundation models, researchers…

Large Language Models (LLMs) have shown significant progress in Open-domain question answering (ODQA), yet most evaluations focus on English and assume locale-invariant answers across languages. This assumption neglects the cultural and…

Computation and Language · Computer Science 2025-08-25 Keon-Woo Roh , Yeong-Joon Ju , Seong-Whan Lee

In recent years, large language models (LLMs) have achieved state-of-the-art results in various biological sequence analysis tasks, such as sequence classification, structure prediction, and function prediction. Similar to advancements in…

Genomics · Quantitative Biology 2025-02-19 Wang Liang

Time series data are integral to critical applications across domains such as finance, healthcare, transportation, and environmental science. While recent work has begun to explore multi-task time series question answering (QA), current…

Large Language Models (LLMs) stand at the forefront of a number of Natural Language Processing (NLP) tasks. Despite the widespread adoption of LLMs in NLP, much of their potential in broader fields remains largely unexplored, and…

Machine Learning · Computer Science 2024-03-11 Zhiqiang Zhong , Kuangyu Zhou , Davide Mottin

Pre-trained LLMs have demonstrated substantial capabilities across a range of conventional natural language processing (NLP) tasks, such as summarization and entity recognition. In this paper, we explore the application of LLMs in the…

Quantitative Methods · Quantitative Biology 2024-08-14 Kamyar Zeinalipour , Neda Jamshidi , Monica Bianchini , Marco Maggini , Marco Gori