Related papers: The Sequence Reconstruction of Permutations under …
We study error-correcting codes in the space $\mathcal{S}_{n,q}$ of length-$n$ multisets over a $q$-ary alphabet, motivated by permutation channels in which ordering is completely lost and errors act solely by deletions of symbols, i.e., by…
Consider a random graph $G$ of size $N$ constructed according to a \textit{graphon} $w \, : \, [0,1]^{2} \mapsto [0,1]$ as follows. First embed $N$ vertices $V = \{v_1, v_2, \ldots, v_N\}$ into the interval $[0,1]$, then for each $i < j$…
We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…
The Gap-Hamming-Distance problem arose in the context of proving space lower bounds for a number of key problems in the data stream model. In this problem, Alice and Bob have to decide whether the Hamming distance between their $n$-bit…
We consider a class of pattern matching problems where a normalising transformation is applied at every alignment. Normalised pattern matching plays a key role in fields as diverse as image processing and musical information processing…
A permutation $\pi$ over alphabet $\Sigma = {1,2,3,\ldots,n}$, is a sequence where every element $x$ in $\Sigma$ occurs exactly once. $S_n$ is the symmetric group consisting of all permutations of length $n$ defined over $\Sigma$. $I_n$ =…
We study optimal reconstruction codes over the multiple-burst substitution channel. Our main contribution is establishing a trade-off between the error-correction capability of the code, the number of reads used in the reconstruction…
Recently there has been interest in the construction of small parity check sets for iterative decoding of the Hamming code with the property that each uncorrectable (or stopping) set of size three is the support of a codeword and hence…
Reparameterization invariance, a symmetry of heavy quark effective theory, appears in different forms in the literature. The most commonly cited forms of the reparameterization transformation are shown to induce the same constraints on…
We explore the probability that a permutation sampled from the symmetric group of order n uniformly at random has cycles of lengths not exceeding r. Asymptotic formulas valid in specified regions for the ratio n/r are obtained using the…
The problem of reconstructing strings from substring information has found many applications due to its importance in genomic data sequencing and DNA- and polymer-based data storage. One practically important and challenging paradigm…
We study the problem of identifying an n-bit string using a single quantum query to an oracle that computes the Hamming distance between the query and hidden strings. The standard action of the oracle on a response register of dimension r…
The repetition threshold for words on $n$ letters, denoted $\mbox{RT}(n)$, is the infimum of the set of all $r$ such that there are arbitrarily long $r$-free words over $n$ letters. A repetition threshold for circular words on $n$ letters…
Two words have a reverse if they have the same pair of distinct letters on the same pair of positions, but in reversed order. A set of words no two of which have a reverse is said to be reverse-free. Let F(n,k) be the maximum size of a…
A reconstruction problem of words from scattered factors asks for the minimal information, like multisets of scattered factors of a given length or the number of occurrences of scattered factors from a given set, necessary to uniquely…
We study $P(n,3)$, the size of the largest subset of the set of all permutations $S_n$ with minimum Kendall $\tau$-distance $3$. Using a combination of group theory and integer programming, we reduced the upper bound of $P(p,3)$ from…
Let $n, r, k$ be positive integers such that $3\leq k < n$ and $2\leq r \leq k-1$. Let $m(n, r, k)$ denote the maximum number of edges an $r$-uniform hypergraph on $n$ vertices can have under the condition that any collection of $i$ edges,…
In this paper we prove new lower bounds for the maximal size of permutation codes by connecting the theory of permutation codes with the theory of linear block codes. More specifically, using the columns of a parity check matrix of an…
Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…
A composition of a nonnegative integer (n) is a sequence of positive integers whose sum is (n). A composition is palindromic if it is unchanged when its terms are read in reverse order. We provide a generating function for the number of…