Related papers: The Sequence Reconstruction of Permutations under …

An $(n,k,r)$ \emph{locally repairable code} (LRC) is an $[n,k,d]$ linear code where every code symbol can be repaired from at most $r$ other code symbols. An LRC is said to be optimal if the minimum distance attains the Singleton-like bound…

A generic $(r,m)$-erasure correcting set is a collection of vectors in $\bF_2^r$ which can be used to generate, for each binary linear code of codimension $r$, a collection of parity check equations that enables iterative decoding of all…

For a given $n$, what is the smallest number $k$ such that every sequence of length $n$ is determined by the multiset of all its $k$-subsequences? This is called the $k$-deck problem for sequence reconstruction, and has been generalized to…

We show that for every sufficiently large $n$, the number of monotone subsequences of length four in a permutation on $n$ points is at least $\binom{\lfloor n/3 \rfloor}{4} + \binom{\lfloor(n+1)/3\rfloor}{4} + \binom{\lfloor…

Define $S_n(R;T)$ to be the number of permutations on $n$ letters which avoid all patterns in the set $R$ and contain each pattern in the multiset $T$ exactly once. In this paper we enumerate $S_n(\{\alpha\};\{\beta\})$ and…

Correlation measure of order $k$ is an important measure of randomness in binary sequences. This measure tries to look for dependence between several shifted version of a sequence. We study the relation between the correlation measure of…

In this paper, we study three applications of recursion to problems in coding and random permutations. First, we consider locally recoverable codes with partial locality and use recursion to estimate the minimum distance of such codes. Next…

A superpermutation on $n$ symbols is a string that contains each of the $n!$ permutations of the $n$ symbols as a contiguous substring. The shortest superpermutation on $n$ symbols was conjectured to have length $\sum_{i=1}^n i!$. The…

The palindromic fingerprint of a string $S[1\ldots n]$ is the set $PF(S) = \{(i,j)~|~ S[i\ldots j] \textit{ is a maximal }\\ \textit{palindrome substring of } S\}$. In this work, we consider the problem of string reconstruction from a…

The Permutation Pattern Matching problem asks, given two permutations $\sigma$ on $n$ elements and $\pi$, whether $\sigma$ admits a subsequence with the same relative order as $\pi$ (or, in the counting version, how many such subsequences…

The {\em shortest common superstring} and the {\em shortest common supersequence} are two well studied problems having a wide range of applications. In this paper we consider both problems with resource constraints, denoted as the…

Permutation patterns and pattern avoidance have been intensively studied in combinatorics and computer science, going back at least to the seminal work of Knuth on stack-sorting (1968). Perhaps the most natural algorithmic question in this…

Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for unique string…

Let $A_2(n,d)$ be the maximum size of a binary code of length $n$ and minimum distance $d$. In this paper we present the following new lower bounds: $A_2(18,4) \ge 5632$, $A_2(21,4) \ge 40960$, $A_2(22,4) \ge 81920$, $A_2(23,4) \ge 163840$,…

We improve the lower bound on the number of permutations of {1,2,...,n} in which no 3-term arithmetic progression occurs as a subsequence, and derive lower bounds on the upper and lower densities of subsets of the positive integers that can…

We propose a list-decoding scheme for reconstruction codes in the context of uniform-tandem-duplication noise, which can be viewed as an application of the associative memory model to this setting. We find the uncertainty associated with…

In this paper, we study permutations $\pi \in S_n$ with exactly $m$ transpositions. In particular, we are interested in the expected value of $\pi(1)$ when such permutations are chosen uniformly at random. When $n$ is even, this expected…

In the graph shotgun assembly problem, we are given the balls of radius $r$ around each vertex of a graph and asked to reconstruct the graph. We study the shotgun assembly of the Erd\H{o}s-R\'enyi random graph $\mathcal G(n,p)$ for a wide…

Fix a word $w$ in a free group $F$ on $r$ generators. A $w$-random permutation in the symmetric group $S_N$ is obtained by sampling $r$ independent uniformly random permutations $\sigma_{1},\ldots,\sigma_{r}\in S_{N}$ and evaluating…

A mapping of $k$-bit strings into $n$-bit strings is called an $(\alpha,\beta)$-map if $k$-bit strings which are more than $\alpha k$ apart are mapped to $n$-bit strings that are more than $\beta n$ apart. This is a relaxation of the…