Related papers: MCPmed: A Call for MCP-Enabled Bioinformatics Web …
Bringing generative AI into the architecture, engineering and construction (AEC) field requires systems that can translate natural language instructions into actions on standardized data models. We present MCP4IFC, a comprehensive…
In this paper, we present BIMS (Biomedical Information Management System). BIMS is a software architecture designed to provide a flexible computational framework to manage the information needs of a wide range of biomedical research…
The Model Context Protocol (MCP) enables Large Language Models (LLMs) to interact with external tools via tool descriptors, thereby extending their capabilities for task execution, autonomous decision-making, and multi-agent coordination.…
Machine learning (ML) has the potential to revolutionize various domains, but its adoption is often hindered by the disconnect between the needs of domain experts and translating these needs into robust and valid ML tools. Despite recent…
The rapid advancement of Artificial Intelligence has resulted in the advent of Large Language Models (LLMs) with the capacity to produce text that closely resembles human communication. These models have been seamlessly integrated into…
Model Context Protocol (MCP) enables agents to interact with external tools, yet empirical research on MCP is hindered by the lack of large-scale, accessible datasets. We present MCPZoo, the largest and most comprehensive dataset of MCP…
AI-assisted developer services are increasingly embedded in modern IDEs, yet enterprises must ensure these tools operate within existing identity, access control, and governance requirements. The Model Context Protocol (MCP) enables AI…
The Model Context Protocol (MCP) is an emerging open standard that defines a unified, bi-directional communication and dynamic discovery protocol between AI models and external tools or resources, aiming to enhance interoperability and…
The Model Context Protocol (MCP) has unified the interface between Large Language Models (LLMs) and external tools, yet a fundamental gap remains in how agents conceptualize the environments within which they operate. Current paradigms are…
The Model Context Protocol (MCP) has emerged as a standard for connecting Large Language Models (LLMs) to external tools and data. However, MCP servers often expose privileged capabilities, such as file system access, network requests, and…
The Model Context Protocol (MCP), introduced by Anthropic in November 2024 and now governed by the Linux Foundation's Agentic AI Foundation, has rapidly become the de facto standard for connecting large language model (LLM)-based agents to…
Personalized AI assistants, a hallmark of the human-like capabilities of Large Language Models (LLMs), are a challenging application that intertwines multiple problems in LLM research. Despite the growing interest in the development of…
Scientific communities are increasingly adopting machine learning and deep learning models in their applications to accelerate scientific insights. High performance computing systems are pushing the frontiers of performance with a rich…
In today's world of big data, computational analysis has become a key driver of biomedical research. Recent exponential growth in the volume of available omics data has reshaped the landscape of contemporary biology, creating demand for a…
Biomedical research centers can empower basic discovery and novel therapeutic strategies by leveraging their large-scale datasets from experiments and patients. This data, together with new technologies to create and analyze it, has ushered…
This paper explores the development of the Six Stages of Information Search Model and its enhancement through the application of the Large Language Model (LLM) powered Information Search Processes (ISP) in healthcare. The Six Stages Model,…
Analytical methods underpin geotechnical engineering practice, yet their implementation remains fragmented across error-prone spreadsheets and opaque proprietary software. While Large Language Models (LLMs) offer transformative potential…
With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational…
Artificial intelligence (AI) techniques are widely applied in the life sciences. However, applying innovative AI techniques to understand and deconvolute biological complexity is hindered by the learning curve for life science scientists to…
The rapid adoption of foundation models has significantly expanded the capabilities of software systems, enabling them to perform complex language, reasoning, and interaction tasks that were previously difficult to automate. However, this…