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We apply preference learning to the task of language model-guided design of novel structural alloys. In contrast to prior work that focuses on generating stable inorganic crystals, our approach targets the synthesizeability of a specific…

Computational Engineering, Finance, and Science · Computer Science 2025-11-18 Satanu Ghosh , Collin Holgate , Neal R. Brodnik , Doug Downey , Samantha Daly , Tresa M. Pollock , Samuel Carton

Aligning text-to-video diffusion models with human preferences is crucial for generating high-quality videos. Existing Direct Preference Otimization (DPO) methods rely on multi-sample ranking and task-specific critic models, which is…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 Zitong Huang , Kaidong Zhang , Yukang Ding , Chao Gao , Rui Ding , Ying Chen , Wangmeng Zuo

Directed evolution is a versatile technique in protein engineering that mimics the process of natural selection by iteratively alternating between mutagenesis and screening in order to search for sequences that optimize a given property of…

Biomolecules · Quantitative Biology 2024-05-02 Lixue Cheng , Ziyi Yang , Changyu Hsieh , Benben Liao , Shengyu Zhang

Large Language Models (LLMs) have exhibited remarkable performance across a wide range of domains, motivating research into their potential for recommendation systems. Early efforts have leveraged LLMs' rich knowledge and strong…

Information Retrieval · Computer Science 2025-04-03 Chao Sun , Yaobo Liang , Yaming Yang , Shilin Xu , Tianmeng Yang , Yunhai Tong

Direct Preference Optimization is an offline post-SFT method for aligning language models from preference pairs, with strong results in instruction following and summarization. However, DPO's sequence-level implicit reward can be brittle…

Computation and Language · Computer Science 2026-03-03 Samah Fodeh , Linhai Ma , Ganesh Puthiaraju , Srivani Talakokkul , Afshan Khan , Ashley Hagaman , Sarah R. Lowe , Aimee Kendall Roundtree

Recently, preference optimization methods such as DPO have significantly enhanced large language models (LLMs) in wide tasks including dialogue and question-answering. However, current methods fail to account for the varying difficulty…

Computation and Language · Computer Science 2024-12-31 Jingyuan Ma , Rui Li , Zheng Li , Lei Sha , Zhifang Sui

Direct Preference Optimization (DPO) has emerged as a promising approach for aligning large language models with human preferences. While prior work mainly extends DPO from the aspect of the objective function, we instead improve DPO from…

Machine Learning · Computer Science 2026-02-17 Xun Deng , Han Zhong , Rui Ai , Fuli Feng , Zheng Wang , Xiangnan He

Fine-tuning pre-trained Large Language Models (LLMs) is essential to align them with human values and intentions. This process often utilizes methods like pairwise comparisons and KL divergence against a reference LLM, focusing on the…

Computation and Language · Computer Science 2024-09-02 Yongcheng Zeng , Guoqing Liu , Weiyu Ma , Ning Yang , Haifeng Zhang , Jun Wang

For aligning large language models (LLMs), prior work has leveraged reinforcement learning via human feedback (RLHF) or variations of direct preference optimization (DPO). While DPO offers a simpler framework based on maximum likelihood…

Artificial Intelligence · Computer Science 2025-05-27 Anirudhan Badrinath , Prabhat Agarwal , Jiajing Xu

Protein design is a fundamental challenge in biotechnology, aiming to design novel sequences with specific functions within the vast space of possible proteins. Recent advances in deep generative models have enabled function-based protein…

Machine Learning · Computer Science 2025-10-15 Nuowei Liu , Jiahao Kuang , Yanting Liu , Tao Ji , Changzhi Sun , Man Lan , Yuanbin Wu

DPO is an effective preference optimization algorithm. However, the DPO-tuned models tend to overfit on the dispreferred samples, manifested as overly long generations lacking diversity. While recent regularization approaches have…

Computation and Language · Computer Science 2025-08-26 Chenxu Yang , Ruipeng Jia , Naibin Gu , Zheng Lin , Siyuan Chen , Chao Pang , Weichong Yin , Yu Sun , Hua Wu , Weiping Wang

Direct Preference Optimization (DPO) has emerged as a prominent algorithm for the direct and robust alignment of Large Language Models (LLMs) with human preferences, offering a more straightforward alternative to the complex Reinforcement…

Computation and Language · Computer Science 2024-12-10 Junru Lu , Jiazheng Li , Siyu An , Meng Zhao , Yulan He , Di Yin , Xing Sun

We present Anchored Direct Preference Optimization (ADPO), a policy alignment method derived from first principles of KL-regularized reinforcement learning. Unlike standard approaches that treat the reference policy merely as a regularizer,…

Machine Learning · Computer Science 2026-01-13 Wang Zixian

Aligning large language models (LLMs) with human values is an increasingly critical step in post-training. Direct Preference Optimization (DPO) has emerged as a simple, yet effective alternative to reinforcement learning from human feedback…

Artificial Intelligence · Computer Science 2025-07-29 Yifan Wang , Runjin Chen , Bolian Li , David Cho , Yihe Deng , Ruqi Zhang , Tianlong Chen , Zhangyang Wang , Ananth Grama , Junyuan Hong

Diffusion models have achieved impressive results in generative tasks such as text-to-image synthesis, yet they often struggle to fully align outputs with nuanced user intent and maintain consistent aesthetic quality. Existing…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Dohyun Kim , Seungwoo Lyu , Seung Wook Kim , Paul Hongsuck Seo

Direct Preference Optimization (DPO) has been proposed as an effective and efficient alternative to reinforcement learning from human feedback (RLHF). However, neither RLHF nor DPO take into account the fact that learning certain…

Computer Vision and Pattern Recognition · Computer Science 2026-02-16 Florinel-Alin Croitoru , Vlad Hondru , Radu Tudor Ionescu , Nicu Sebe , Mubarak Shah

This paper demonstrates that language models are strong structure-based protein designers. We present LM-Design, a generic approach to reprogramming sequence-based protein language models (pLMs), that have learned massive sequential…

Machine Learning · Computer Science 2023-02-10 Zaixiang Zheng , Yifan Deng , Dongyu Xue , Yi Zhou , Fei YE , Quanquan Gu

The class of direct preference optimization (DPO) algorithms has emerged as a promising approach for solving the alignment problem in foundation models. These algorithms work with very limited feedback in the form of pairwise preferences…

Machine Learning · Computer Science 2026-02-03 Luca Viano , Ruida Zhou , Yifan Sun , Mahdi Namazifar , Volkan Cevher , Shoham Sabach , Mohammad Ghavamzadeh

Preference Optimization (PO), is gaining popularity as an alternative choice of Proximal Policy Optimization (PPO) for aligning Large Language Models (LLMs). Recent research on aligning LLMs iteratively with synthetic or partially synthetic…

Computation and Language · Computer Science 2024-09-16 Yaojie Shen , Xinyao Wang , Yulei Niu , Ying Zhou , Lexin Tang , Libo Zhang , Fan Chen , Longyin Wen

Direct Preference Optimization (DPO) has shown promising results in aligning generative outputs with human preferences by distinguishing between chosen and rejected samples. However, a critical limitation of DPO is likelihood displacement,…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Ruojun Xu , Yu Kai , Xuhua Ren , Jiaxiang Cheng , Bing Ma , Tianxiang Zheng , Qinhlin Lu