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Direct Preference Optimization (DPO) has been widely adopted for large language model alignment due to its simple training procedure and lack of an explicit reward model. However, in iterative DPO, when the policy model from the previous…

Information Retrieval · Computer Science 2026-05-25 Lingling Fu , Yongfu Xu

Motivation. Protein design aims to identify sequences compatible with a given protein fold but incompatible to any alternative folds. To select the correct sequences and to guide the search process, a design scoring function is critically…

Biomolecules · Quantitative Biology 2007-05-23 Changyu Hu , Xiang Li , Jie Liang

Protein design using structure prediction models such as AlphaFold2 has shown remarkable success, but existing approaches like relaxed sequence optimization (RSO) rely on single-path gradient descent and ignore sequence-space constraints,…

Machine Learning · Computer Science 2025-10-29 Joohwan Ko , Aristofanis Rontogiannis , Yih-En Andrew Ban , Axel Elaldi , Nicholas Franklin

Preference-based reinforcement learning (RL) is a key paradigm for aligning policies with human judgments, yet its theoretical behavior in distributed settings where preference data are fragmented across heterogeneous users remains poorly…

Machine Learning · Computer Science 2026-05-21 Zhanhong Jiang

Instruction data selection aims to identify a high-quality subset from the training set that matches or exceeds the performance of the full dataset on target tasks. Existing methods focus on the instruction-to-response mapping, but neglect…

Machine Learning · Computer Science 2025-05-20 Wenya Guo , Zhengkun Zhang , Xumeng Liu , Ying Zhang , Ziyu Lu , Haoze Zhu , Xubo Liu , Ruxue Yan

Direct Preference Optimization (DPO) has emerged as a compelling approach for training Large Language Models (LLMs) to adhere to human preferences. However, the performance of DPO is sensitive to the fine-tuning of its trade-off parameter…

Artificial Intelligence · Computer Science 2024-10-15 Junkang Wu , Yuexiang Xie , Zhengyi Yang , Jiancan Wu , Jinyang Gao , Bolin Ding , Xiang Wang , Xiangnan He

We study an LLM fine-tuning task for designing reward functions for sequential resource allocation problems in public health, guided by human preferences expressed in natural language. This setting presents a challenging testbed for…

Machine Learning · Computer Science 2025-11-19 Cheol Woo Kim , Shresth Verma , Mauricio Tec , Milind Tambe

Protein fitness optimization involves finding a protein sequence that maximizes desired quantitative properties in a combinatorially large design space of possible sequences. Recent advances in steering protein generative models (e.g.,…

Biomolecules · Quantitative Biology 2025-10-22 Jason Yang , Wenda Chu , Daniel Khalil , Raul Astudillo , Bruce J. Wittmann , Frances H. Arnold , Yisong Yue

Large Language Models (LLMs) have demonstrated remarkable potential in automating software development tasks. While recent advances leverage Supervised Fine-Tuning (SFT) and Direct Preference Optimization (DPO) to align models with human…

Software Engineering · Computer Science 2025-12-09 Xin Yin , Chao Ni , Xiaohu Yang

Effective representations of protein sequences are widely recognized as a cornerstone of machine learning-based protein design. Yet, protein bioengineering poses unique challenges for sequence representation, as experimental datasets…

Quantitative Methods · Quantitative Biology 2026-04-07 Ana F. Rodrigues , Lucas Ferraz , Laura Balbi , Pedro Giesteira Cotovio , Catia Pesquita

Large Language Models (LLMs) have become pivotal in advancing natural language processing, yet their potential to perpetuate biases poses significant concerns. This paper introduces a new framework employing Direct Preference Optimization…

Computation and Language · Computer Science 2024-07-22 Ahmed Allam

Large language models (LLMs) trained on webscale data can produce toxic outputs, raising concerns for safe deployment. Prior defenses, based on applications of DPO, NPO, and similar algorithms, reduce the likelihood of harmful…

Enhancing the conformity of large language models (LLMs) to human preferences remains an ongoing research challenge. Recently, offline approaches such as Direct Preference Optimization (DPO) have gained prominence as attractive options due…

Machine Learning · Computer Science 2024-09-05 Kaihui Chen , Hao Yi , Qingyang Li , Tianyu Qi , Yulan Hu , Fuzheng Zhang , Yong Liu

In the field of large language models (LLMs), aligning models with the diverse preferences of users is a critical challenge. Direct Preference Optimization (DPO) has played a key role in this area. It works by using pairs of preferences…

Computation and Language · Computer Science 2024-05-29 Yueqin Yin , Zhendong Wang , Yi Gu , Hai Huang , Weizhu Chen , Mingyuan Zhou

Engineering design optimization requires an efficient combination of a 3D shape representation, an optimization algorithm, and a design performance evaluation method, which is often computationally expensive. We present a prompt evolution…

Artificial Intelligence · Computer Science 2024-08-13 Melvin Wong , Thiago Rios , Stefan Menzel , Yew Soon Ong

Recent studies have identified Direct Preference Optimization (DPO) as an efficient and reward-free approach to improving video generation quality. However, existing methods largely follow image-domain paradigms and are mainly developed on…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Jie Du , Xinyu Gong , Qingshan Tan , Wen Li , Yangming Cheng , Weitao Wang , Chenlu Zhan , Suhui Wu , Hao Zhang , Jun Zhang

Reinforcement learning from human feedback (RLHF) plays a crucial role in aligning language models with human preferences. While the significance of dataset quality is generally recognized, explicit investigations into its impact within the…

Machine Learning · Computer Science 2024-12-04 Tetsuro Morimura , Mitsuki Sakamoto , Yuu Jinnai , Kenshi Abe , Kaito Ariu

Learning from preference feedback has emerged as an essential step for improving the generation quality and performance of modern language models (LMs). Despite its widespread use, the way preference-based learning is applied varies wildly,…

Computation and Language · Computer Science 2024-10-10 Hamish Ivison , Yizhong Wang , Jiacheng Liu , Zeqiu Wu , Valentina Pyatkin , Nathan Lambert , Noah A. Smith , Yejin Choi , Hannaneh Hajishirzi

Generating high-quality code that solves complex programming tasks is challenging, especially with current decoder-based models that produce highly stochastic outputs. In code generation, even minor errors can easily break the entire…

Computation and Language · Computer Science 2025-04-15 Nikita Sorokin , Ivan Sedykh , Valentin Malykh

Direct Preference Optimization (DPO) has emerged as a powerful approach to align text-to-image (T2I) models with human feedback. Unfortunately, successful application of DPO to T2I models requires a huge amount of resources to collect and…

Computer Vision and Pattern Recognition · Computer Science 2024-10-31 Shyamgopal Karthik , Huseyin Coskun , Zeynep Akata , Sergey Tulyakov , Jian Ren , Anil Kag