English
Related papers

Related papers: Genomic-Informed Heterogeneous Graph Learning for …

200 papers

Accurate and timely air quality and weather predictions are of great importance to urban governance and human livelihood. Though many efforts have been made for air quality or weather prediction, most of them simply employ one another as…

Machine Learning · Computer Science 2021-01-06 Jindong Han , Hao Liu , Hengshu Zhu , Hui Xiong , Dejing Dou

Understanding age-group dynamics of infectious diseases is a fundamental issue for both scientific study and policymaking. Age-structure epidemic models were developed in order to study and improve our understanding of these dynamics. By…

Populations and Evolution · Quantitative Biology 2019-11-22 Rami Yaari , Amit Huppert , Itai Dattner

Rapidly evolving viruses use antigenic drift as a key mechanism to evade host immunity and persist in real populations. While traditional models of antigenic drift and epidemic spread rely on low-dimensional antigenic spaces, genomic…

Populations and Evolution · Quantitative Biology 2025-06-05 Santiago Lamata-Otín , Octavian C. Rotita-Ion , Alex Arenas , David Soriano-Paños , Jesús Gómez-Gardeñes

Capturing the structured mixing within a population is key to the reliable projection of infectious disease dynamics and hence informed control. Both heterogeneity in the number of contacts and age-structured mixing have been repeatedly…

Social and Information Networks · Computer Science 2026-03-17 Luke Murray Kearney , Emma L Davis , Matt J Keeling

Modeling and simulations of pandemic dynamics play an essential role in understanding and addressing the spreading of highly infectious diseases such as COVID-19. In this work, we propose a novel deep learning architecture named…

Machine Learning · Computer Science 2023-05-16 Viet Bach Nguyen , Truong Son Hy , Long Tran-Thanh , Nhung Nghiem

Zoonotic disease transmission between animals and humans is a growing risk and the agricultural context acts as a likely point of transition, with individual heterogeneity acting as an important contributor. Thus, understanding the dynamics…

Populations and Evolution · Quantitative Biology 2024-12-10 Teddy Lazebnik , Orr Spiegel

The estimation from available data of parameters governing epidemics is a major challenge. In addition to usual issues (data often incomplete and noisy), epidemics of the same nature may be observed in several places or over different…

Methodology · Statistics 2021-09-20 Romain Narci , Maud Delattre , Catherine Larédo , Elisabeta Vergu

Being able to predict the crowd flows in each and every part of a city, especially in irregular regions, is strategically important for traffic control, risk assessment, and public safety. However, it is very challenging because of…

Computer Vision and Pattern Recognition · Computer Science 2020-07-20 Junkai Sun , Junbo Zhang , Qiaofei Li , Xiuwen Yi , Yuxuan Liang , Yu Zheng

Influenza A is responsible for 290,000 to 650,000 respiratory deaths a year, though this estimate is an improvement from years past due to improvements in sanitation, healthcare practices, and vaccination programs. In this study, we perform…

Machine Learning · Computer Science 2025-07-29 Edmund F. Agyemang , Hansapani Rodrigo , Vincent Agbenyeavu

Spatio-temporal forecasting in various domains, like traffic prediction and weather forecasting, is a challenging endeavor, primarily due to the difficulties in modeling propagation dynamics and capturing high-dimensional interactions among…

Machine Learning · Computer Science 2024-05-29 Xiaobei Zou , Luolin Xiong , Yang Tang , Jürgen Kurths

Multivariate time series forecasting enables the prediction of future states by leveraging historical data, thereby facilitating decision-making processes. Each data node in a multivariate time series encompasses a sequence of multiple…

Machine Learning · Computer Science 2025-05-02 Xinlong Zhao , Liying Zhang , Tianbo Zou , Yan Zhang

Infectious disease forecasting has been a key focus and proved to be crucial in controlling epidemic. A recent trend is to develop forecast-ing models based on graph neural networks (GNNs). However, existing GNN-based methods suffer from…

Machine Learning · Computer Science 2024-05-28 Mingjie Qiu , Zhiyi Tan , Bing-kun Bao

Human albumin is essential for indicating the body's overall health. Accurately predicting plasma albumin levels and determining appropriate doses are urgent clinical challenges, particularly in critically ill patients, to maintain optimal…

Machine Learning · Computer Science 2024-03-11 Zeyang Zhang , Xingwang Li , Fei Teng , Ning Lin , Xueling Zhu , Xin Wang , Wenwu Zhu

Autonomous driving requires an understanding of the static environment from sensor data. Learned Bird's-Eye View (BEV) encoders are commonly used to fuse multiple inputs, and a vector decoder predicts a vectorized map representation from…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Thomas Monninger , Zihan Zhang , Zhipeng Mo , Md Zafar Anwar , Steffen Staab , Sihao Ding

Analyses and visualizations by the ISSCOR method of influenza virus hemagglutinin genes of different A-subtypes revealed some rather striking temporal relationships between groups of individual gene subsets. Based on these findings we…

Genomics · Quantitative Biology 2013-11-11 Jan P. Radomski , Piotr P. Slonimski , Włodzimierz Zagórski-Ostoja , Piotr Borowicz

Safe swarm navigation in cluttered indoor environment requires long-horizon planning, reactive obstacle avoidance, and adaptive compliance. We propose ImpedanceDiffusion, a hierarchical framework that leverages image-conditioned…

Accurate traffic forecasting is essential for smart cities to achieve traffic control, route planning, and flow detection. Although many spatial-temporal methods are currently proposed, these methods are deficient in capturing the…

Machine Learning · Computer Science 2024-03-07 Aoyu Liu , Yaying Zhang

The influenza virus hemagglutinin is an important part of the virus attachment to the host cells. The hemagglutinin proteins are one of the genetic regions of the virus with a high potential for mutations. Due to the importance of…

Forecasting influenza-like illness (ILI) is of prime importance to epidemiologists and health-care providers. Early prediction of epidemic outbreaks plays a pivotal role in disease intervention and control. Most existing work has either…

Machine Learning · Computer Science 2020-01-01 Songgaojun Deng , Shusen Wang , Huzefa Rangwala , Lijing Wang , Yue Ning

Highly pathogenic avian influenza (HPAI), especially the H5N1 strain, remains a major threat to animal health, food security, and public health. Recent spillover events in dairy cattle in the United States, linked to wild birds, highlight…

Populations and Evolution · Quantitative Biology 2025-08-19 H. O. Fatoyinbo , P. Tiwari , P. O. Olanipekun , I. Ghosh