Related papers: Adaptive Spatial Transcriptomics Interpolation via…
The objective of this work is to segment any arbitrary structures of interest (SOI) in 3D volumes by only annotating a single slice, (i.e. semi-automatic 3D segmentation). We show that high accuracy can be achieved by simply propagating the…
Effective learning of spatial-temporal information within a point cloud sequence is highly important for many down-stream tasks such as 4D semantic segmentation and 3D action recognition. In this paper, we propose a novel framework named…
Single-cell-resolution spatial transcriptomics profiles gene expression at cellular locations in native tissues, yet accurate cell-type annotation remains challenging: imaging-based platforms are constrained by targeted gene panels, whereas…
Spatiotemporal (ST) learning has become a crucial technique to enable smart cities and sustainable urban development. Current ST learning models capture the heterogeneity via various spatial convolution and temporal evolution blocks.…
While pathology foundation models have transformed cancer image analysis, they often lack integration with molecular data at single-cell resolution, limiting their utility for precision oncology. Here, we present PAST, a pan-cancer…
Many algorithms have been developed to solve the inverse problem of coded aperture snapshot spectral imaging (CASSI), i.e., recovering the 3D hyperspectral images (HSIs) from a 2D compressive measurement. In recent years, learning-based…
Spatial transcriptomics (ST) is essential for understanding diseases and developing novel treatments. It measures gene expression of each fine-grained area (i.e., different windows) in the tissue slide with low throughput. This paper…
Spatial transcriptomics methods capture cellular measurements such as gene expression and cell types at specific locations in a cell, helping provide a localized picture of tissue health. Traditional visualization techniques superimpose the…
Pathology foundation models learn morphological representations through self-supervised pretraining on large-scale whole-slide images, yet they do not explicitly capture the underlying molecular state of the tissue. Spatial transcriptomics…
Unsupervised image-to-image (I2I) translation learns cross-domain image mapping that transfers input from the source domain to output in the target domain while preserving its semantics. One challenge is that different semantic statistics…
Recent advances in computational pathology have leveraged vision-language models to learn joint representations of Hematoxylin and Eosin (HE) images with spatial transcriptomic (ST) profiles. However, existing approaches typically align HE…
This paper introduces a novel Pre-trained Spatial Temporal Many-to-One (P-STMO) model for 2D-to-3D human pose estimation task. To reduce the difficulty of capturing spatial and temporal information, we divide this task into two stages:…
Speckle-based phase-contrast X-ray imaging (SB-PCXI) can reconstruct high-resolution images of weakly-attenuating materials that would otherwise be indistinguishable in conventional attenuation-based imaging. The experimental setup of…
Diffusion bridge models and stochastic interpolants enable high-quality image-to-image (I2I) translation by creating paths between distributions in pixel space. However, the proliferation of techniques based on incompatible mathematical…
Satellite Image Time Series (SITS) representation learning is complex due to high spatiotemporal resolutions, irregular acquisition times, and intricate spatiotemporal interactions. These challenges result in specialized neural network…
Available studies on chronic lower back pain (cLBP) typically focus on one or a few specific tissues rather than conducting a comprehensive layer-by-layer analysis. Since three-dimensional (3-D) images often contain hundreds of slices,…
Slice interpolation is a fast growing field in medical image processing. Intensity-based interpolation and object-based interpolation are two major groups of methods in the literature. In this paper, we describe an object-oriented,…
Spatial transcriptomics measures the expression of thousands of genes in a tissue sample while preserving its spatial structure. This class of technologies has enabled the investigation of the spatial variation of gene expressions and their…
Cardiac Magnetic Resonance (CMR) imaging is a critical tool for diagnosing and managing cardiovascular disease, yet its utility is often limited by the sparse acquisition of 2D short-axis slices, resulting in incomplete volumetric…
Purpose: Spatio-temporal encoding (SPEN) experiments can deliver single-scan MR images without folding complications and with robustness to chemical shift and susceptibility artifacts. It is here shown that further resolution improvements…