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Molecular interactions have widely been modelled as networks. The local wiring patterns around molecules in molecular networks are linked with their biological functions. However, networks model only pairwise interactions between molecules…

Molecular Networks · Quantitative Biology 2018-09-21 Thomas Gaudelet , Noel Malod-Dognin , Natasa Przulj

We consider a model for random hypergraphs with identifiability, an analogue of connectedness. This model has a phase transition in the proportion of identifiable vertices when the underlying random graph becomes critical. The phase…

Probability · Mathematics 2007-05-23 Christina Goldschmidt

We introduce a formalism for computing bond percolation properties of a class of correlated and clustered random graphs. This class of graphs is a generalization of the Configuration Model where nodes of different types are connected via…

Statistical Mechanics · Physics 2017-10-06 Antoine Allard , Laurent Hébert-Dufresne , Pierre-André Noël , Vincent Marceau , Louis J. Dubé

In functionally complex systems, higher-order connectivity is often revealed in the underlying geometry of networked units. Furthermore, such systems often show signatures of self-organized criticality, a specific type of non-equilibrium…

Statistical Mechanics · Physics 2026-03-11 Bosiljka Tadic , Roderick Melnik

We define direct sums and a corresponding notion of connectedness for graph limits. Every graph limit has a unique decomposition as a direct sum of connected components. As is well-known, graph limits may be represented by symmetric…

Combinatorics · Mathematics 2008-04-10 Svante Janson

In this paper we discuss the connected components of underlying graphs of halving lines' configurations. We show how to create a configuration whose underlying graph is the union of two given underlying graphs. We also prove that every…

Combinatorics · Mathematics 2013-04-23 Tanya Khovanova , Dai Yang

We view hyper-graphs as incidence graphs, i.e. bipartite graphs with a set of nodes representing vertices and a set of nodes representing hyper-edges, with two nodes being adjacent if the corresponding vertex belongs to the corresponding…

Logic in Computer Science · Computer Science 2015-05-08 Nans Lefebvre

Hypergraphs provide a natural way to represent polyadic relationships in network data. For large hypergraphs, it is often difficult to visually detect structures within the data. Recently, a scalable polygon-based visualization approach was…

Graphics · Computer Science 2024-07-30 Peter Oliver , Eugene Zhang , Yue Zhang

Hypergraphs have emerged as a powerful modeling framework to represent systems with multiway interactions, that is systems where interactions may involve an arbitrary number of agents. Here we explore the properties of real-world…

Social and Information Networks · Computer Science 2023-07-11 Timothy LaRock , Renaud Lambiotte

Many empirical systems contain complex interactions of arbitrary size, representing, for example, chemical reactions, social groups, co-authorship relationships, and ecological dependencies. These interactions are known as higher-order…

We propose high-order hypergraph walks as a framework to generalize graph-based network science techniques to hypergraphs. Edge incidence in hypergraphs is quantitative, yielding hypergraph walks with both length and width. Graph methods…

Physics and Society · Physics 2020-06-09 Sinan G. Aksoy , Cliff Joslyn , Carlos Ortiz Marrero , Brenda Praggastis , Emilie Purvine

Finding inherent or processed links within a dataset allows to discover potential knowledge. The main contribution of this article is to define a global framework that enables optimal knowledge discovery by visually rendering co-occurences…

Social and Information Networks · Computer Science 2018-09-05 Xavier Ouvrard , Jean-Marie Le Goff , Stephane Marchand-Maillet

An ordered graph is a graph enhanced with a linear order on the vertex set. An ordered graph is a core if it does not have an order-preserving homomorphism to a proper subgraph. We say that $H$ is the core of $G$ if (i) $H$ is a core, (ii)…

Computational Complexity · Computer Science 2025-12-01 Michal Čertík , Andreas Emil Feldmann , Jaroslav Nešetřil , Paweł Rzążewski

Traditional functional connectivity based on functional magnetic resonance imaging (fMRI) can only capture pairwise interactions between brain regions. Hypergraphs, which reveal high-order relationships among multiple brain regions, have…

Neurons and Cognition · Quantitative Biology 2025-05-20 Wenqi Hu , Xuerui Su , Guanliang Li , Yidi Pan , Aijing Lin

Graph matching pairs corresponding nodes across two or more graphs. The problem is difficult as it is hard to capture the structural similarity across graphs, especially on large graphs. We propose to incorporate high-order information for…

Artificial Intelligence · Computer Science 2020-10-12 Hui Xu , Liyao Xiang , Youmin Le , Xiaoying Gan , Yuting Jia , Luoyi Fu , Xinbing Wang

Graph neural network, as a powerful graph representation technique based on deep learning, has shown superior performance and attracted considerable research interest. However, it has not been fully considered in graph neural network for…

Social and Information Networks · Computer Science 2021-01-21 Xiao Wang , Houye Ji , Chuan Shi , Bai Wang , Peng Cui , P. Yu , Yanfang Ye

Temporal Graph Neural Networks (TGNNs) have gained growing attention for modeling and predicting structures in temporal graphs. However, existing TGNNs primarily focus on pairwise interactions while overlooking higher-order structures that…

Machine Learning · Computer Science 2025-05-22 Jingzhe Liu , Zhigang Hua , Yan Xie , Bingheng Li , Harry Shomer , Yu Song , Kaveh Hassani , Jiliang Tang

Psychiatric disorders have been traditionally conceptualized as latent conditions producing observable symptoms, but recent studies suggest that psychopathology may emerge from symptoms interactions. Psychometric networking model these…

Social and Information Networks · Computer Science 2026-04-27 Francesca Possenti , Laura Girelli , Paolo Tieri , Manuela Petti

Hypergraphs, describing networks where interactions take place among any number of units, are a natural tool to model many real-world social and biological systems. In this work we propose a principled framework to model the organization of…

Social and Information Networks · Computer Science 2023-10-25 Nicolò Ruggeri , Martina Contisciani , Federico Battiston , Caterina De Bacco

Stream graphs model highly dynamic networks in which nodes and/or links arrive and/or leave over time. Strongly connected components in stream graphs were defined recently, but no algorithm was provided to compute them. We present here…

Social and Information Networks · Computer Science 2021-09-03 Léo Rannou , Clémence Magnien , Matthieu Latapy
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