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We propose a neural network model for joint extraction of named entities and relations between them, without any hand-crafted features. The key contribution of our model is to extend a BiLSTM-CRF-based entity recognition model with a deep…

Computation and Language · Computer Science 2019-04-16 Dat Quoc Nguyen , Karin Verspoor

Document-level relation extraction requires integrating information within and across multiple sentences of a document and capturing complex interactions between inter-sentence entities. However, effective aggregation of relevant…

Computation and Language · Computer Science 2020-07-29 Guoshun Nan , Zhijiang Guo , Ivan Sekulić , Wei Lu

Extracting entities and relations is an essential task of information extraction. Triplets extracted from a sentence might overlap with each other. Previous methods either did not address the overlapping issues or solved overlapping issues…

Computation and Language · Computer Science 2023-04-07 Hao Zhang

Relation extraction (RE) is the task of extracting relations between entities in text. Most RE methods extract relations from free-form running text and leave out other rich data sources, such as tables. We explore RE from the perspective…

Computation and Language · Computer Science 2023-07-13 Arif Shahriar , Rohan Saha , Denilson Barbosa

In this paper, we present an end-to-end joint entity and relation extraction approach based on transformer-based language models. We apply the model to the task of linking mathematical symbols to their descriptions in LaTeX documents. In…

Computation and Language · Computer Science 2022-05-05 Nicholas Popovic , Walter Laurito , Michael Färber

Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating information within and across sentences, capturing complex…

Computation and Language · Computer Science 2022-04-12 John Giorgi , Gary D. Bader , Bo Wang

An exhaustive study has been conducted to investigate span-based models for the joint entity and relation extraction task. However, these models sample a large number of negative entities and negative relations during the model training,…

Computation and Language · Computer Science 2022-08-19 Bin Ji , Hao Xu , Jie Yu , Shasha Li , Jun Ma , Yuke Ji , Huijun Liu

Joint extraction of entities and relations from unstructured texts is a crucial task in information extraction. Recent methods achieve considerable performance but still suffer from some inherent limitations, such as redundancy of relation…

Computation and Language · Computer Science 2021-06-21 Hengyi Zheng , Rui Wen , Xi Chen , Yifan Yang , Yunyan Zhang , Ziheng Zhang , Ningyu Zhang , Bin Qin , Ming Xu , Yefeng Zheng

When patients need to take medicine, particularly taking more than one kind of drug simultaneously, they should be alarmed that there possibly exists drug-drug interaction. Interaction between drugs may have a negative impact on patients or…

Computation and Language · Computer Science 2020-08-31 Siliang Tang , Qi Zhang , Tianpeng Zheng , Mengdi Zhou , Zhan Chen , Lixing Shen , Xiang Ren , Yueting Zhuang , Shiliang Pu , Fei Wu

Document-Level Zero-Shot Relation Extraction (DocZSRE) aims to predict unseen relation labels in text documents without prior training on specific relations. Existing approaches rely on Large Language Models (LLMs) to generate synthetic…

Computation and Language · Computer Science 2026-01-13 Mohan Raj Chanthran , Soon Lay Ki , Ong Huey Fang , Bhawani Selvaretnam

Extraction of Application Programming Interfaces (APIs) and their semantic relations from unstructured text (e.g., Stack Overflow) is a fundamental work for software engineering tasks (e.g., API recommendation). However, existing approaches…

Software Engineering · Computer Science 2023-01-11 Qing Huang , Yanbang Sun , Zhenchang Xing , Min Yu , Xiwei Xu , Qinghua Lu

Named entity discovery and linking is the fundamental and core component of question answering. In Question Entity Discovery and Linking (QEDL) problem, traditional methods are challenged because multiple entities in one short question are…

Computation and Language · Computer Science 2018-12-06 Kai Lei , Bing Zhang , Yong Liu , Yang Deng , Dongyu Zhang , Ying Shen

We propose Medical Entity Definition-based Sentence Embedding (MED-SE), a novel unsupervised contrastive learning framework designed for clinical texts, which exploits the definitions of medical entities. To this end, we conduct an…

Machine Learning · Computer Science 2022-12-12 Hyeonbin Hwang , Haanju Yoo , Yera Choi

This paper proposes a structure-aware decoding method based on large language models to address the difficulty of traditional approaches in maintaining both semantic integrity and structural consistency in nested and overlapping entity…

Computation and Language · Computer Science 2026-01-29 Zhimin Qiu , Di Wu , Feng Liu , Yuxiao Wang

Combination drug therapies are treatment regimens that involve two or more drugs, administered more commonly for patients with cancer, HIV, malaria, or tuberculosis. Currently there are over 350K articles in PubMed that use the "combination…

Computation and Language · Computer Science 2023-03-30 Yuhang Jiang , Ramakanth Kavuluru

Extracting relationships and interactions between different biological entities is still an extremely challenging problem but has not received much attention as much as extraction in other generic domains. In addition to the lack of…

Computation and Language · Computer Science 2020-06-02 Abhinav Bhatt , Kaustubh D. Dhole

Relation classification is an important semantic processing task in the field of natural language processing. In this paper, we propose the task of relation classification for Chinese literature text. A new dataset of Chinese literature…

Computation and Language · Computer Science 2018-03-18 Ji Wen , Xu Sun , Xuancheng Ren , Qi Su

We propose a novel neural method to extract drug-drug interactions (DDIs) from texts using external drug molecular structure information. We encode textual drug pairs with convolutional neural networks and their molecular pairs with graph…

Computation and Language · Computer Science 2018-05-16 Masaki Asada , Makoto Miwa , Yutaka Sasaki

Generative pre-trained transformer (GPT) models have shown promise in clinical entity and relation extraction tasks because of their precise extraction and contextual understanding capability. In this work, we further leverage the Unified…

Computation and Language · Computer Science 2024-07-16 Kriti Bhattarai , Inez Y. Oh , Zachary B. Abrams , Albert M. Lai

Document-level relation extraction is a challenging task which requires reasoning over multiple sentences in order to predict relations in a document. In this paper, we pro-pose a joint training frameworkE2GRE(Entity and Evidence Guided…

Computation and Language · Computer Science 2020-08-28 Kevin Huang , Guangtao Wang , Tengyu Ma , Jing Huang